Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00106 ATGGAAGGACAAAGTAACCAAGAGAACCCTGTGCAACTAATGTCTTGTGACACTAGAGGAACCAGCAACCATGTCTCTCATTCAGCTGAGGATCATCTATTTCCAAACCCAAAATTTTTTATTTCAGCATCTGGAAGGAATGGGAGCCACTGGACTTGTCTCCCAAAACCCTCTCATAATTATGTTGAATATCTCTCAGAATCCTCAACTTATCTGCCTAATGCTACACCTGAATATATGATTGGGAGCAGTTTTCCACCTGTTGGAAGCATCAATGATGGTAATGGAGGGGTCAATGGAAATGAAAATGCTTATGGTTTTAAACCTGCTGATTCTTTAAGTAATAACATTGACATTAGGAAGCAGGTGGGGTTTTGGAGACTTGATGAAGGAGAGAAAGCAATTAAAGTTGAAACTGAAATTAGTCAAAATCTTCTTTATGCTGAGAGCCATGCTTCATGGACAGCAGATTCAGTTGGAGATAACCACAATACTTCACGACTCGATCCAATGGTGATGGTTGGTGCACCTGCTTTCCTTCCCAAACCAGGATGCAGCTCCTCAAAACAGAAAACACGCGTCACTGACCGTCAACGCAGACAACGCATTGCTGACAACCTCAAAGCCTTACACGAGTTGCTTCCAGATCCAGCAGAGGGTAGTGAAGCGTACATACTGGACGATATCATTGACTATGTCAAATATTTGCAGCTTCAAATTAAGGAACTAAGTGGAAGTAGACTGCAAGCTGAATCAAGTGCTCTACCACTTGTTTTTCATGAGGGTTACGGCCATTATATCAATCAACAGATGCTCAATGAACCCCTTGAAGAGATAATGGGGAAACTAGTTGAAGAACATTCAGCAGCAGCCAGTCAGCTACTGGAGAGTAAGGGTCTTTTCCTGGTGCCTATGGCTTTGGTTGATGACTTAAACGAAGCTGTGCAAATGTTTGGTGGGAGTGCACTTGTTTGA 975 0.4256 MEGQSNQENPVQLMSCDTRGTSNHVSHSAEDHLFPNPKFFISASGRNGSHWTCLPKPSHNYVEYLSESSTYLPNATPEYMIGSSFPPVGSINDGNGGVNGNENAYGFKPADSLSNNIDIRKQVGFWRLDEGEKAIKVETEISQNLLYAESHASWTADSVGDNHNTSRLDPMVMVGAPAFLPKPGCSSSKQKTRVTDRQRRQRIADNLKALHELLPDPAEGSEAYILDDIIDYVKYLQLQIKELSGSRLQAESSALPLVFHEGYGHYINQQMLNEPLEEIMGKLVEEHSAAASQLLESKGLFLVPMALVDDLNEAVQMFGGSALV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00106 324 Pfam Helix-loop-helix DNA-binding domain 190 237 IPR011598 GO:0046983
Gabi4573g00106 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Gabi4573g00106 324 Gene3D - 186 255 IPR036638 GO:0046983
Gabi4573g00106 324 CDD bHLH_AtbHLH_like 195 244 IPR045239 -
Gabi4573g00106 324 SMART finulus 193 242 IPR011598 GO:0046983
Gabi4573g00106 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 251 IPR036638 GO:0046983
Gabi4573g00106 324 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 58 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00106 Gabi-Chr4573 877313 879427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00106 194 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 40.323 2.66e-21 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4573g00106 HLH 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00106 - - gmx:100788949 417.157