Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00088 ATGAGGTCTCATATCACAAACTTGTCAACTGATCAGACAGAGGAAAAGGAAAAGCTTGCAACAACGAGGAAGCTTCTTCCATCTCTCAACAATGGTGGAGGAGGAGGAGACACGGGTTCTGAAGCTGCAACTAACGCTGGCTATGGTCTCAGAGAAAACCCAAAGAAGACATGGAGAGTTGCAGATTCAAGTGAAGACACTCTGGTCTCTGACAAATTCTGCAAAGAGTGTGGCAAAGGGTTTCACTCTTGGAAAGCTTTGTTTGGTCACATGAAATGCCACTCTGACAAAGAAAGAGTTTCCAATAGCTTTGAGGATCAAGATTCATGGACTAATAATAATAATACTAATAACAATAATGCTAGTGCTACTACACAGAAGCTGGTCATGGATAGCCAATCTGATAATGAAGCCACTGCTCCAAATCGAAGAACAAGATCAAAGAGAAAAACAAGGTGCATGGTTAGTACTGCTGCAACTTCTTCTGTGTCTTTTGCTTATCCTTCTTCATCTTCTCTTTCTGAGGTTGAACAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTTAGTCCTTGGATTGGTCTTCATTCTGTTGCTGAATCCTCTGACAATTACTCTGCTTACTTCGAAGCTCCATCTTCAGTTCGAACTAATCTGGTTATTAAATTTGAGAGCAACAAGAAGACTACACCTGCCCTTAATGGTTCTGAGATAGCAAAACAAAGTGATAACAAGAAGTGGGAGTTTGGCAAATCTGTTTCTGCAAATCCCAACTACAAAGGGAAAGGTTCAGAGCTTTTGGCTACTGAGTTTTCTGAAAACAGATTTAAGATGAATAAAAAGGCTATTAAGCTTGAGCTTGATTCTCCATCTGCATTGAAGGATTCTGGAGGTGAACTTGGGAAGAACAGAGTTAATGGAATAGAATCAGTTTCATCAAAATCCGCTACTAACAAGTACAATTCAATCAAGCCAAAGTTTTTTGGTTCCGAATTGAAGTCAAATTCCCTTAAGACTTCTGAAGGTGAATTCAGCAAGAACTCTCATAAGAGGGGTAAGTTCGAGTGTACTACTTGCAACAAAGTCTTCCACTCCTACCAAGCTCTTGGAGGTCATAGAGCTAGTCACAAGAAGATCAAAGGCTGTTTTGCTTCAAAAAATGAGAGCAGTGAAAACAGCATTGAAACTGACCTCTCTCCTGAAGCAGCAGCAACAACAACTGAAAGCAAGCTCATGAAGAACAGTGACAGTGAATATATGGTTGAACATAAATTGGCTGCTAGTTTTCATAATGAGGAAGAGATAGTTAAAGAGTTCAAGAAGAGCAAAGTGCATGAGTGTCCAATTTGCCTTAAGGTTTTTCCATCTGGTCAAGCCTTGGGTGGCCATAAGAGATCTCATTTGGTTGGTGGGTCTGAGAGTAGAAACTTTCAAACAGTTGTAGTTCAGGAACCTGTCCCAGAAGTTAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACAGAAGAGGAAAGCAATAGCCATGCTGACTCTAACAGACCCTGGTGGGTAGTAGAAGACAACCACAATCACAAACAGGAGGCACTGGTAGGCCTCATGTCTAGCTAA 1623 0.4116 MRSHITNLSTDQTEEKEKLATTRKLLPSLNNGGGGGDTGSEAATNAGYGLRENPKKTWRVADSSEDTLVSDKFCKECGKGFHSWKALFGHMKCHSDKERVSNSFEDQDSWTNNNNTNNNNASATTQKLVMDSQSDNEATAPNRRTRSKRKTRCMVSTAATSSVSFAYPSSSSLSEVEQEQEEVAMSLMMLSRDVSPWIGLHSVAESSDNYSAYFEAPSSVRTNLVIKFESNKKTTPALNGSEIAKQSDNKKWEFGKSVSANPNYKGKGSELLATEFSENRFKMNKKAIKLELDSPSALKDSGGELGKNRVNGIESVSSKSATNKYNSIKPKFFGSELKSNSLKTSEGEFSKNSHKRGKFECTTCNKVFHSYQALGGHRASHKKIKGCFASKNESSENSIETDLSPEAAATTTESKLMKNSDSEYMVEHKLAASFHNEEEIVKEFKKSKVHECPICLKVFPSGQALGGHKRSHLVGGSESRNFQTVVVQEPVPEVRDFLDLNLPAATEEESNSHADSNRPWWVVEDNHNHKQEALVGLMSS 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00088 540 Pfam C2H2-type zinc finger 74 96 - -
Gabi4573g00088 540 Pfam C2H2-type zinc finger 449 472 - -
Gabi4573g00088 540 Pfam C2H2-type zinc finger 359 383 - -
Gabi4573g00088 540 SUPERFAMILY beta-beta-alpha zinc fingers 73 381 IPR036236 -
Gabi4573g00088 540 MobiDBLite consensus disorder prediction 1 49 - -
Gabi4573g00088 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 450 472 IPR013087 -
Gabi4573g00088 540 ProSitePatterns Zinc finger C2H2 type domain signature. 361 381 IPR013087 -
Gabi4573g00088 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Gabi4573g00088 540 ProSitePatterns Zinc finger C2H2 type domain signature. 452 472 IPR013087 -
Gabi4573g00088 540 SMART c2h2final6 450 472 IPR013087 -
Gabi4573g00088 540 SMART c2h2final6 359 381 IPR013087 -
Gabi4573g00088 540 SMART c2h2final6 72 94 IPR013087 -
Gabi4573g00088 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 359 386 IPR013087 -
Gabi4573g00088 540 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Gabi4573g00088 540 Gene3D Classic Zinc Finger 356 472 - -
Gabi4573g00088 540 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 521 - -
Gabi4573g00088 540 MobiDBLite consensus disorder prediction 130 153 - -
Gabi4573g00088 540 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00088 Gabi-Chr4573 748908 750593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00088 351 512 C2H2 Transcription Factor Family AT2G45120 42.424 6.38e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4573g00088 zf-C2H2_6 2.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00088 - - gmx:102666705 660.603