Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00080 ATGTCAGAGCAAGAAACAGATTCATGTGGCTTCCTGTTACTCTTTTTCTTAATCCTTGTTTCAGGAAAAGTTGTTTCCGGGGAATCTTTGGACACGGACAAACAAGTTCTGATGAAGCTGAAATCGTACCTTGACAACAAAACTCTTGCAGACCGAGGAGGTTACAAATATTGGAACACCAACATATCCAATCCTTGTGAATGGGAAGGAATCAGGTGCAGCAGCAGCAACACGGGGAGGGTGGTTGGTGTGGACCTTTCTAACAGTGTCATAACCGGTGAGATATTCCACAACTTCTCTCAGCTAACTGAGCTCACACACCTTGATCTCTCTCAGAACACACTCTTTGGTGAGATTCCAGAGGACTTGAGGCGCTGCAACAAGCTCGTGTATCTTAACCTCTCTCATAATATTCTTGCTGGAGAGTTTAACTTGATTGGATTGACAAGCTTGCAAACACTGGACTTGTCTCTTAATAGAATCTATGGAGAGCTTGGGTTCAATTTCCCTGCCATTTGTGACAATTTAGTCACTTTGAACGTCTCCGGTAATAACTTAACTGGTAGGATTGATAACGTCTTTGATCAATGTCCCAATTTGCAGTACTTGGATTTGAGCACCAACAATTTTAGCGGCAGCATATGGATGAATTTTGCAAGGTTGAGAGAGTTTTCTGTTGCGGAGAATCAACTCAATGGGACCATTCCTTCGGAAGCTTTTCCTATGAATTGTAGCCTTGAAGAACTAGACCTTTCGGTGAATGGTTTTGTTGGTGAGGCACCAACAGATGTTGCTAACTGCAAGAATTTGAGCGTTCTGAATCTTTCAAGCAACAAATTCACTGGGGGTATTCCCATTGAAATGGGTTCCATTTCGGGCCTCAAAGCATTGTACTTGGGGAACAACAGCTTTTCAAGTAATATTCCAGATACCCTTCTGAACTTGACCAATTTGGTTTTCTTGGATTTGAGCAGAAACGGATTTGGTGGGGACATACAAGAGATATTTGGGAAATTTAAGCAACTGAACTTTCTTCTATTGCACTCAAATTCTTACACTGGAGGATTGATATCTTCGGGAATTCTTACATTGCCAAACATTGTGCGGTTGGACCTAAGCTTCAATAACTTTTCAGGTCGATTACCCGTTGAAATCTCTCAGATGTCAAGTCTGAAGTTGTTAATGTTATCCTACAACAAATTCAATGGATCTATTCCACCCGAATTTGGAAACATGTATCGCCTGCAAGCACTTGACCTTGCCTTCAACGAGTTGACTGGTCCAATCCCACCAAGCCTTGGAAACTTGAGTTCCCTTTTATGGTTGATGCTTGCGGATAATTCATTAACCGGAGAAATCCCCCCAGAGTTGGGAAACTGTTCAAGCTTGTTATGGTTGAACCTTGCCAACAATAAACTCTCTGGAAATTTGCCTTCTGAATTGACCAAAATTGGAAGGAACGCCATGGCCACATTTGAATTAAATAGGCAAAATGATGGAATGGTTGCTGGCTCTGGTGAATGTGTAACAATGAGGAGATGGATACCAGCAGATTACCCTCCATTCAGCTTTGTGTATACCATCTTATCAAGGAAAAGTTGTAGAGGCCTTTGGGACAAATTGCTCAAAGGAAATGGCATTTTCCCCTTTTGCGTACCTGGCTCTTCCTTTCGCTTGAACCAGATATCCGGGTATGTTCAGCTAAGTGGAAACCAGCTCAGTGGTGAAATCCCTTCAGAGATTGGGACAATGATTAACTTCAGTTTGTTGCACGTGGGGTTCAACAATTTCTCTGGGAGGTTCCCTCCAGAGATTGGAGGTATGCCACTTGTAGTCTTGAACATGACCAGAAACATGTTTTCAGGTGAAATTCCACAGGAAATTGGCAACTTCAAATGTATGGAGAATCTGGATTTGTCTTACAACAATTTCTCTGGTACATTTCCCACAAGTTTGAACAAGTTGGCTGAGCTGAACAAGTTCAACATCTCATACAATCCCTACATATCTGGTGTAGTCCCAGCAACAGGACAATTTGCTACTTTTGATATAGATTCATATTATGGTGACCCCCTCTTGATCCTTCCCCCGTTCATAAAAAACAAAACAAATGATAAAAACACGACCCTTCCAAAAGACCATAAAAAGCCCAATAAGTTGTCTGTGTTTTTGGTGTTTTTAGCTGTAACACTGTCTTTCATGGTAATTGGACTTACTTATATTATAGTCTGTGTCTTGGTGAAAAGGCCATCAGAGGAACCAGGATACCTCTTGAGGGATTCAAAACAGTGGCATGATTCCAGTAGCTCCGGATCCTCATCATGGTTGTCTGATAAAGTTAAGGTCATCCACTTGAACAAGACAGCTTTTACTCATGCTGACATTCTGAAAGCAACAGACAGTTTCTCAGAGAACAGAATCATAGGAAAAGGGGGATTTGGAACAGTGTACAAGGGAGTGTTTTTAGATGGTAGAGAAGTGGCAGTGAAGAAGCTCCAAAGGGAAGGACTTGAAGGTGAAAAGGAATTCCGGGCTGAAATGGAGGTTCTGAGTGGTCATAGTTTTGGTTGGCCTCATCCAAACCTGGTCACACTCTACGGGTGGTGCCTGAATGGTTCAGAGAAGATACTGGTCTATGAGTACATAGAAGGTGGAAGCTTGGAGGATCTAGTGACTGATAGAACAGGTTTGACATGGAAGAGGAGGCTAGAAGTGGCAATTGATGTGGCTAGAGCACTAGTCTATTTACACCACGAATGCTACCCTTCTATTGTGCACAGAGATGTTAAGGCTAGCAATGTATTGCTAGACAAGGTTGGGAAGGCGAAAGTCACAGATTTTGGACTTGCTAGAGTAGTTGATGCTGGGGATAGCCATGTGAGTACTATGGTGGCTGGGACAGTGGGTTATGTTGCACCTGAATATGGACAGACATGGCAAGCCACAACAAAAGGAGATGTGTACAGTTTTGGGGTGTTGGTTATGGAGCTTGCAACAGGTAGGAGAGCAGTGGATGGTGGTGAAGAGTGTTTGGTGGAATGGGCTAGGCGTGTTATGGGATATGGAAGACATCATCATGGGTTAAGCCGTTCTGTGCCAGTTTTGCTAATGGGTTCTGGGCTAGTTGGTGGGGCAGAGGAGATGGGTGAACTCCTAAGAATTGGGGTGAAGTGCACAGCTGAGGCACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCTATGCTGATTAAGATTTCCAACCCCAAGGGAGACTCAAGTTATGGACACCTTGTTTAG 3279 0.4321 MSEQETDSCGFLLLFFLILVSGKVVSGESLDTDKQVLMKLKSYLDNKTLADRGGYKYWNTNISNPCEWEGIRCSSSNTGRVVGVDLSNSVITGEIFHNFSQLTELTHLDLSQNTLFGEIPEDLRRCNKLVYLNLSHNILAGEFNLIGLTSLQTLDLSLNRIYGELGFNFPAICDNLVTLNVSGNNLTGRIDNVFDQCPNLQYLDLSTNNFSGSIWMNFARLREFSVAENQLNGTIPSEAFPMNCSLEELDLSVNGFVGEAPTDVANCKNLSVLNLSSNKFTGGIPIEMGSISGLKALYLGNNSFSSNIPDTLLNLTNLVFLDLSRNGFGGDIQEIFGKFKQLNFLLLHSNSYTGGLISSGILTLPNIVRLDLSFNNFSGRLPVEISQMSSLKLLMLSYNKFNGSIPPEFGNMYRLQALDLAFNELTGPIPPSLGNLSSLLWLMLADNSLTGEIPPELGNCSSLLWLNLANNKLSGNLPSELTKIGRNAMATFELNRQNDGMVAGSGECVTMRRWIPADYPPFSFVYTILSRKSCRGLWDKLLKGNGIFPFCVPGSSFRLNQISGYVQLSGNQLSGEIPSEIGTMINFSLLHVGFNNFSGRFPPEIGGMPLVVLNMTRNMFSGEIPQEIGNFKCMENLDLSYNNFSGTFPTSLNKLAELNKFNISYNPYISGVVPATGQFATFDIDSYYGDPLLILPPFIKNKTNDKNTTLPKDHKKPNKLSVFLVFLAVTLSFMVIGLTYIIVCVLVKRPSEEPGYLLRDSKQWHDSSSSGSSSWLSDKVKVIHLNKTAFTHADILKATDSFSENRIIGKGGFGTVYKGVFLDGREVAVKKLQREGLEGEKEFRAEMEVLSGHSFGWPHPNLVTLYGWCLNGSEKILVYEYIEGGSLEDLVTDRTGLTWKRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKVGKAKVTDFGLARVVDAGDSHVSTMVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATGRRAVDGGEECLVEWARRVMGYGRHHHGLSRSVPVLLMGSGLVGGAEEMGELLRIGVKCTAEAPQARPNMKEVLAMLIKISNPKGDSSYGHLV 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00080 1092 SUPERFAMILY L domain-like 551 674 - -
Gabi4573g00080 1092 Gene3D Ribonuclease Inhibitor 241 335 IPR032675 -
Gabi4573g00080 1092 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 882 1084 - -
Gabi4573g00080 1092 SUPERFAMILY L domain-like 174 478 - -
Gabi4573g00080 1092 Gene3D Ribonuclease Inhibitor 552 710 IPR032675 -
Gabi4573g00080 1092 Gene3D Transferase(Phosphotransferase) domain 1 882 1088 - -
Gabi4573g00080 1092 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Gabi4573g00080 1092 Gene3D Ribonuclease Inhibitor 338 501 IPR032675 -
Gabi4573g00080 1092 SUPERFAMILY Protein kinase-like (PK-like) 784 1078 IPR011009 -
Gabi4573g00080 1092 ProSiteProfiles Protein kinase domain profile. 802 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4573g00080 1092 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 355 1078 - -
Gabi4573g00080 1092 Gene3D Phosphorylase Kinase; domain 1 765 881 - -
Gabi4573g00080 1092 FunFam Putative LRR receptor-like serine/threonine-protein kinase 339 500 - -
Gabi4573g00080 1092 SMART serkin_6 802 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4573g00080 1092 FunFam Leucine-rich repeat receptor protein kinase EMS1 238 333 - -
Gabi4573g00080 1092 ProSitePatterns Serine/Threonine protein kinases active-site signature. 924 936 IPR008271 GO:0004672|GO:0006468
Gabi4573g00080 1092 CDD STKc_IRAK 808 1079 - -
Gabi4573g00080 1092 SUPERFAMILY L domain-like 59 261 - -
Gabi4573g00080 1092 Pfam Protein kinase domain 803 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4573g00080 1092 ProSitePatterns Protein kinases ATP-binding region signature. 808 831 IPR017441 GO:0005524
Gabi4573g00080 1092 FunFam serine/threonine-protein kinase BRI1-like 2 761 881 - -
Gabi4573g00080 1092 Pfam Leucine Rich repeats (2 copies) 175 211 IPR025875 -
Gabi4573g00080 1092 Gene3D Ribonuclease Inhibitor 29 170 IPR032675 -
Gabi4573g00080 1092 SMART LRR_typ_2 102 126 IPR003591 -
Gabi4573g00080 1092 SMART LRR_typ_2 436 460 IPR003591 -
Gabi4573g00080 1092 SMART LRR_typ_2 291 315 IPR003591 -
Gabi4573g00080 1092 SMART LRR_typ_2 388 411 IPR003591 -
Gabi4573g00080 1092 SMART LRR_typ_2 218 242 IPR003591 -
Gabi4573g00080 1092 SMART LRR_typ_2 364 387 IPR003591 -
Gabi4573g00080 1092 SMART LRR_typ_2 148 175 IPR003591 -
Gabi4573g00080 1092 Gene3D Ribonuclease Inhibitor 171 240 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00080 Gabi-Chr4573 671552 674966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00080 53 1076 Receptor kinase-like Gene Family AT1G55610 33.041 9.29e-156 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Gabi4573g00080 Pkinase 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00080 - - gmx:100816573 1780.38