Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00076 ATGTCGGACGAGGAGCATCACTTCGAGTCAAAGGCTGATGCTGGAGCCTCCAAAACATACCCTCAACAAGCCGGCACTATCCGCAAAAACGGTTACATCGTTATCAAGGGACGCCCCTGCAAGGTTGTTGAAGTTTCAACTTCCAAGACTGGGAAGCATGGTCATGCTAAGTGCCACTTTGTTGGAATTGATATCTTCACTGCAAAGAAGCTTGAAGATATTGTGCCCTCTTCTCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTACCAGCTTATTGATATTTCTGAGGATGGATTTGTGAGCTTGCTTACTGAAAATGGGAACACCAAGGATGACCTCAAGCTTCCTACCGATGAGAGTCTTCTCTCTCAGATTTTCTCTAATTGGGTCTGTATCATTGATTGCTCTCTGCAGATAAAGGATGGATTTGGTGATGGTAAGGACCTTGTTGTTTCTGTCATGTCTGCTATGGGTGAGGAACAGATTTGTGCCCTGAAGGATATTGGGCCAAAGAACTAG 525 0.4457 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDESLLSQIFSNWVCIIDCSLQIKDGFGDGKDLVVSVMSAMGEEQICALKDIGPKN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00076 174 PIRSF Transl_init_eIF5A 1 171 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi4573g00076 174 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 171 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi4573g00076 174 SMART eIF_5a_2 85 168 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi4573g00076 174 SUPERFAMILY Nucleic acid-binding proteins 86 170 IPR012340 -
Gabi4573g00076 174 Gene3D - 86 173 IPR012340 -
Gabi4573g00076 174 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 168 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi4573g00076 174 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gabi4573g00076 174 NCBIfam translation initiation factor IF-5A 17 165 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gabi4573g00076 174 MobiDBLite consensus disorder prediction 1 21 - -
Gabi4573g00076 174 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Gabi4573g00076 174 CDD S1_eIF5A 86 170 - -
Gabi4573g00076 174 Gene3D - 1 85 IPR014722 -
Gabi4573g00076 174 FunFam Eukaryotic translation initiation factor 5A 86 137 - -
Gabi4573g00076 174 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00076 Gabi-Chr4573 630937 632495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00076 1 173 Eukaryotic Initiation Factors Gene Family AT1G13950 83.237 7.05e-101 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00076 K03263 K02180 gmx:100305991 311.612