Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00073 ATGGGGTGCGTCTTTGTGAAGCAGGCTGTGACGGTGACGCCTGCTATCGATCACTCGGTTGAGTCAGAGAGGAACAAGAAGAAGAAGAAGACTGAGTCAGTGGGAGCGAGTCGGAGCGAGGTGGGTGAGTCAGGGAGGGCGAGTTCCAATGGTGGAAGTGAGTCTCTGAGCTTCAGATTAGGGAACCTGAACAAGTATTTGGAGGGGGAGCAAGCGGCGGCGGGTTGGCCGGCTTGGCTCAGCGCCGTCGCTTGTGAAGCCATTCACGGTTGGGTGCCTCTCCGAGCTGATGCATTTGAGAAACTTGATAAGATTGGGCAGGGTACATATAGTAGTGTTTTCCGAGCAAAGGAACTTGAGACTGGGAAGATAGTGGCACTGAAGAAGGTGAGATTTGACAATTTTGAGCCAGAAAGTGTTAGGTTTATGGCACGAGAAATAATGATTCTCAGAAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCCAGATTGTCTTGTAGCATATACCTTGTATTTGAGTATATGGAGCACGACATCACAGGCCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAACCACAGATGAAATGCTACATGAAGCAGTTGTTATGTGGTCTTGAGCATTGTCACTCACGGGGTGTGATGCACCGGGACATCAAGGGATCAAATCTTCTGGTGAATAATGAAGGGATATTAAAGGTGGCAGATTTTGGATTGGCAAACTTCTCTAATTCTGGGAACAAGCAACCCCTCACCAGTCGTGTTGTCACCTTATGGTACCGCCCTCCGGAGCTTTTGCTTGGTTCAACAGAATATGGTCCATCCGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAGCTACTAGTTGGGAAGCCTATACTTCAAGGGAGAACAGAGGTTGAACAATTGCATAAAATCTTCAAGCTCTGTGGCTCCCCACCCGATGAATACTGGAAAAAGACCAAACTTCCTCATGCAACTTTGTTCAAGCCACAGCAACCATATAGTAGTAGCCTCCGAGAGACATTTAAAGATTTTCCTGCATCCAGTGTAAATATGCTACAAACTCTTCTTTCTGTGGAACCAAACAAGCGTGGGACTGCCTCATCTGCTCTCACATTGGAGTATTTCAAAACAAAACCTTACGCATGTGACCCATCAAGCATACCAAATTACCCACCTAGCAAGGAGATTGATTCAAAAGACGAGGAGGAGTCAAGAAGGAAAAAGATCTGTGGGCGAGTTTGTAGACCTGAAACAAGAAAAACGTCAAGAAAGCCACTAGGACTGAGTAAATTGGCCCCAGCAGAGGATTTGACAAGTCAAACTTCCCAAAAGATCGATGATAGATATGTCCACATTCTTAAAGAAGAGATAACTAACACTGGTGAGGAGGCACCAAAGCCATCAAGTGATAAACCAGAAGATGCTTGCAATATGAAGAATGCATCTCAAGTAGATGTTCCCTTTCCTGGACCATTACAAGTTTCAAAATCAAGTGGCTTTGCATGGGCAAAAAGGCGGAAAGATGACACTTCAATTAGATCCCACACTCGATCTATTTCTAGAGGATATTTATTTAATTCGTTAGAAACTTCTACACTAAATTCAAGGGATAATTCTAACTCCAGAAACTATGAAAATAAGGAATTTTTTGGGGAACGCACTAACTCTAGGGGCCATGACGTACTTCAAATTTCTAAGCTTGCAATGCAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTTCTGAAGAGTACCATTCCCAAGAACTGTCTTCGGTACTTTATCATAGAGAAGACTCACTATCCAAGAGAAGTAACCTGAGTTATCAGGATCAAGGAGAAAAGGTTGAATTTTCAGGGCCCTTACTATCTCAAATGCACACAGTTGACGAGCTCTTAGAAAGACAAGAGCGTCACATGCGGCGCAGTGTCAGAAGATCATGGTTTCAGAGAGATAAGAAGCATGGGAAGTAA 2007 0.4405 MGCVFVKQAVTVTPAIDHSVESERNKKKKKTESVGASRSEVGESGRASSNGGSESLSFRLGNLNKYLEGEQAAAGWPAWLSAVACEAIHGWVPLRADAFEKLDKIGQGTYSSVFRAKELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSEPQMKCYMKQLLCGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTEYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQQPYSSSLRETFKDFPASSVNMLQTLLSVEPNKRGTASSALTLEYFKTKPYACDPSSIPNYPPSKEIDSKDEEESRRKKICGRVCRPETRKTSRKPLGLSKLAPAEDLTSQTSQKIDDRYVHILKEEITNTGEEAPKPSSDKPEDACNMKNASQVDVPFPGPLQVSKSSGFAWAKRRKDDTSIRSHTRSISRGYLFNSLETSTLNSRDNSNSRNYENKEFFGERTNSRGHDVLQISKLAMQNQWSKFDRPDSFDTSEEYHSQELSSVLYHREDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERQERHMRRSVRRSWFQRDKKHGK 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00073 668 SUPERFAMILY Protein kinase-like (PK-like) 92 390 IPR011009 -
Gabi4573g00073 668 FunFam probable serine/threonine-protein kinase At1g54610 182 422 - -
Gabi4573g00073 668 CDD STKc_CDK9_like 99 383 - -
Gabi4573g00073 668 Pfam Protein kinase domain 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4573g00073 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gabi4573g00073 668 PANTHER CELL DIVISION PROTEIN KINASE 97 387 - -
Gabi4573g00073 668 MobiDBLite consensus disorder prediction 464 485 - -
Gabi4573g00073 668 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Gabi4573g00073 668 MobiDBLite consensus disorder prediction 20 53 - -
Gabi4573g00073 668 MobiDBLite consensus disorder prediction 402 432 - -
Gabi4573g00073 668 Gene3D Phosphorylase Kinase; domain 1 86 181 - -
Gabi4573g00073 668 FunFam probable serine/threonine-protein kinase At1g54610 86 181 - -
Gabi4573g00073 668 Gene3D Transferase(Phosphotransferase) domain 1 182 422 - -
Gabi4573g00073 668 MobiDBLite consensus disorder prediction 20 36 - -
Gabi4573g00073 668 ProSiteProfiles Protein kinase domain profile. 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4573g00073 668 MobiDBLite consensus disorder prediction 649 668 - -
Gabi4573g00073 668 MobiDBLite consensus disorder prediction 464 481 - -
Gabi4573g00073 668 SMART serkin_6 99 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4573g00073 668 MobiDBLite consensus disorder prediction 393 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00073 Gabi-Chr4573 608607 613583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00073 91 443 Core Cell Cycle Gene Families AT5G10270 48.509 8.42e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi4573g00073 Pkinase 5.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00073 - - gmx:100816047 1180.24