LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4573g00073	ATGGGGTGCGTCTTTGTGAAGCAGGCTGTGACGGTGACGCCTGCTATCGATCACTCGGTTGAGTCAGAGAGGAACAAGAAGAAGAAGAAGACTGAGTCAGTGGGAGCGAGTCGGAGCGAGGTGGGTGAGTCAGGGAGGGCGAGTTCCAATGGTGGAAGTGAGTCTCTGAGCTTCAGATTAGGGAACCTGAACAAGTATTTGGAGGGGGAGCAAGCGGCGGCGGGTTGGCCGGCTTGGCTCAGCGCCGTCGCTTGTGAAGCCATTCACGGTTGGGTGCCTCTCCGAGCTGATGCATTTGAGAAACTTGATAAGATTGGGCAGGGTACATATAGTAGTGTTTTCCGAGCAAAGGAACTTGAGACTGGGAAGATAGTGGCACTGAAGAAGGTGAGATTTGACAATTTTGAGCCAGAAAGTGTTAGGTTTATGGCACGAGAAATAATGATTCTCAGAAGGCTTGATCATCCAAACATCATTAAACTGGAGGGCTTGATTACTTCCAGATTGTCTTGTAGCATATACCTTGTATTTGAGTATATGGAGCACGACATCACAGGCCTCTTGTCTAGACCAGAAATCAAGTTTAGTGAACCACAGATGAAATGCTACATGAAGCAGTTGTTATGTGGTCTTGAGCATTGTCACTCACGGGGTGTGATGCACCGGGACATCAAGGGATCAAATCTTCTGGTGAATAATGAAGGGATATTAAAGGTGGCAGATTTTGGATTGGCAAACTTCTCTAATTCTGGGAACAAGCAACCCCTCACCAGTCGTGTTGTCACCTTATGGTACCGCCCTCCGGAGCTTTTGCTTGGTTCAACAGAATATGGTCCATCCGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAGCTACTAGTTGGGAAGCCTATACTTCAAGGGAGAACAGAGGTTGAACAATTGCATAAAATCTTCAAGCTCTGTGGCTCCCCACCCGATGAATACTGGAAAAAGACCAAACTTCCTCATGCAACTTTGTTCAAGCCACAGCAACCATATAGTAGTAGCCTCCGAGAGACATTTAAAGATTTTCCTGCATCCAGTGTAAATATGCTACAAACTCTTCTTTCTGTGGAACCAAACAAGCGTGGGACTGCCTCATCTGCTCTCACATTGGAGTATTTCAAAACAAAACCTTACGCATGTGACCCATCAAGCATACCAAATTACCCACCTAGCAAGGAGATTGATTCAAAAGACGAGGAGGAGTCAAGAAGGAAAAAGATCTGTGGGCGAGTTTGTAGACCTGAAACAAGAAAAACGTCAAGAAAGCCACTAGGACTGAGTAAATTGGCCCCAGCAGAGGATTTGACAAGTCAAACTTCCCAAAAGATCGATGATAGATATGTCCACATTCTTAAAGAAGAGATAACTAACACTGGTGAGGAGGCACCAAAGCCATCAAGTGATAAACCAGAAGATGCTTGCAATATGAAGAATGCATCTCAAGTAGATGTTCCCTTTCCTGGACCATTACAAGTTTCAAAATCAAGTGGCTTTGCATGGGCAAAAAGGCGGAAAGATGACACTTCAATTAGATCCCACACTCGATCTATTTCTAGAGGATATTTATTTAATTCGTTAGAAACTTCTACACTAAATTCAAGGGATAATTCTAACTCCAGAAACTATGAAAATAAGGAATTTTTTGGGGAACGCACTAACTCTAGGGGCCATGACGTACTTCAAATTTCTAAGCTTGCAATGCAAAATCAATGGAGTAAGTTTGATCGTCCAGATTCATTTGATACTTCTGAAGAGTACCATTCCCAAGAACTGTCTTCGGTACTTTATCATAGAGAAGACTCACTATCCAAGAGAAGTAACCTGAGTTATCAGGATCAAGGAGAAAAGGTTGAATTTTCAGGGCCCTTACTATCTCAAATGCACACAGTTGACGAGCTCTTAGAAAGACAAGAGCGTCACATGCGGCGCAGTGTCAGAAGATCATGGTTTCAGAGAGATAAGAAGCATGGGAAGTAA	2007	0.4405	MGCVFVKQAVTVTPAIDHSVESERNKKKKKTESVGASRSEVGESGRASSNGGSESLSFRLGNLNKYLEGEQAAAGWPAWLSAVACEAIHGWVPLRADAFEKLDKIGQGTYSSVFRAKELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDITGLLSRPEIKFSEPQMKCYMKQLLCGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGNKQPLTSRVVTLWYRPPELLLGSTEYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKLPHATLFKPQQPYSSSLRETFKDFPASSVNMLQTLLSVEPNKRGTASSALTLEYFKTKPYACDPSSIPNYPPSKEIDSKDEEESRRKKICGRVCRPETRKTSRKPLGLSKLAPAEDLTSQTSQKIDDRYVHILKEEITNTGEEAPKPSSDKPEDACNMKNASQVDVPFPGPLQVSKSSGFAWAKRRKDDTSIRSHTRSISRGYLFNSLETSTLNSRDNSNSRNYENKEFFGERTNSRGHDVLQISKLAMQNQWSKFDRPDSFDTSEEYHSQELSSVLYHREDSLSKRSNLSYQDQGEKVEFSGPLLSQMHTVDELLERQERHMRRSVRRSWFQRDKKHGK	668

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gabi4573g00073	668	SUPERFAMILY	Protein kinase-like (PK-like)	92	390	IPR011009	-
Gabi4573g00073	668	FunFam	probable serine/threonine-protein kinase At1g54610	182	422	-	-
Gabi4573g00073	668	CDD	STKc_CDK9_like	99	383	-	-
Gabi4573g00073	668	Pfam	Protein kinase domain	99	383	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gabi4573g00073	668	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	219	231	IPR008271	GO:0004672\|GO:0006468
Gabi4573g00073	668	PANTHER	CELL DIVISION PROTEIN KINASE	97	387	-	-
Gabi4573g00073	668	MobiDBLite	consensus disorder prediction	464	485	-	-
Gabi4573g00073	668	ProSitePatterns	Protein kinases ATP-binding region signature.	105	128	IPR017441	GO:0005524
Gabi4573g00073	668	MobiDBLite	consensus disorder prediction	20	53	-	-
Gabi4573g00073	668	MobiDBLite	consensus disorder prediction	402	432	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4573g00073	Gabi-Chr4573	608607	613583	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4573g00073	91	443	Core Cell Cycle Gene Families	AT5G10270	48.509	8.42e-115	352

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Gabi4573g00073		Pkinase	5.1e-68	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4573g00073	-		-	gmx:100816047	1180.24

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