Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00072 ATGCTCGTGAAAATTGATATCCATTGTCGTGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAGATGAAGATTATATTCGTGAGGAGATGATGTTTAGAGTTATGTTCCATACTGCATTTGTGCGGTCAAATATATTGATGCTGAGCCGTGATGAAATTGATATTTTGTGGGATGCAAAGGATCAATTTCCCAAGGACTTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTATTATACCTGATCTAACCACAGTCACGGTGAGTGAAGATGCAAATGAGACTGAAAGTGCTGACACAGAAAGTGCTTCACCTGAGGAATTCTATGAAGTGGAAGAGATTTTCAGCAATGTAATTGATGCACAGGAAGGTAAGGGGGAGTATGATTCTCATGCTTTTCATGACAATGCAGTGGATGATGCAAATCATAAAGAGATTTGGAAGGAAGAAGTGGATCCTCATACTTTTCAGGATTGTACACCAGATGATGGGATCCACAAACAGGTTGACAAGATGGATTCTGGTATTAATGTGGTGAAAGACATCTCTGTTGATGATGTGAACTACAAGTTCAATAAGAGCATGGATTCAGATGCAGTGAAGGACATTGCTGTGGATGATGGAGAAATTAAGTTAACTTCCCCTTCAGTCACTTCCGATGTGATGAAAACTCTGGAACCAAAGGAAGTCACTGTGGATGTGCACAGGGATTTGGAAGTTATGCAAAACAAATATGATGAAGATAACGAAGCAACAAAAAATGAATTAGACTCCAAGGCAGGGCAGCAGATGCCTGATATTTCCAAACAAAAATCTGGTAAACTACTTCCATCTACTGCCAAGAAACAGCTTCCATTAAACTCAAAGCCAGTCGGAGATATACTTGCAGCAAAGCAAAAGGTTAAACAACAAGACACTCAAGGTTTTCAGACAAAACAAGCCAAACCGAATGCAGTAACTAGGTGGATTCCTTCTAACAAGGGTTCTTACATAAATTCAATGCATGTGTATTATCCACCATCAAGGAATAATAGTGCACCAGCTGCATTGTCAAATTTTACCTCTCCAAAGGAGAAAATGGAAGATGCCAAAGCAAGATCTTCTTCTGCTCCTCTTGTCTCTGCAATTGTTTCTATTGACATGACAAATGACCAGAAAAGCCGTAAGTTAACCACTTCAAAATCTTCTGGCTACTCAATAGCAGAAATAGATGCAAACTGTCCACCATCACCGTTAGTGTCAATTAAAGAGACATCTCTTCAATCAGTTACTCAAGCACAACAATTGAGCTCAGAGCAAGTGCTACGGCCTCCCCCACCGCCTCCACCTTTGCCTCCAACTCATGCAAGAAACTCTTTACATGTTTTTGAACCTTTATCATTACAGAATGTTGTATCACCTCAAGCTCATCCATCTCTACTAGTAACATCATCTTCTTTGGGTGGAAAAGAGTCTATTGCACAACCGTTAACACATCCGCCACCACCGCCAACTTTAACATCATTTACTAGACCAGAAGTTAGAGAGTATTTACTATCTAGAATTTCTCCTCCCCTTCCCCCTCCCCCTCCCCCTCCCCCTCCGCCCCCATTTTTTGGGCAAAATAAAAAGAGCTTATTACCTTCTCTACCCCTTTTGAAGTCGGTGGGTTCATCAATAGTTGGAGATACTAGTGGTTCTTTATCACCTTCTCTACCCACTCTTCCTTCATGGTCTCCACCTCCACCACCACCACCACCACCACCACCACCACCAATGCCTCCTCTAAGGTATGCAGTTTCATCCACTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCACCGCCACCGCCATCAACAACACCTCCTCCCCCTCCCTCATTTCCTACATCTTTGACACATAAGGCTCCAAACCCTTCGCTCCCACTACCCTCCACTGCATCACATGAAGCTCCATTGGCACCCCCACCTCCACCTCCACCTCCACCTTCTTTTAGTAGAGCTCAACCACTGCCTCCTCCACCTCCTTTTAGTAGAGCTCCGCCTCCATTGCATGGAGCTCCACCTACACCTTCCCGACCACCACTTCTTCCTTCATCAGGTGTTGCCCCACCTCCACCTCCTCCTCCTCCTCCAACGTCTAGAGCCCCACCTCCCCCACCCCCACCAATTCGTGGAGCACCACCACCACCTCCTCCAATGCCTAGAGCACCGCCTCCTCCGCCTCCACCTGGTGGACGAGGCCCACCCCCTCCGCCTCCGCCTGGTGGTCGAGGCCCAGCTCCTCCACCTCCCCCTAGTGCTCCTGGTGCTCCACCTCCTCCTAGACCTCCTGGTGGTGCACCTCCGCCGCCTCCACCTTTAGGTTCCAAAGGTGCAAATCTTGTAGCTGATTCGAGAGGGAGAGGGCGTGGATATGCACGCTCTGCAGGAGTTGGTGCAACGGCATCCCGACGATCCTCCTTAAAGCCTCTACATTGGAGTAAGGTTACAAGGGCACTACAAGGAAGTTTATGGGAAGAATTACAAAGACATGGAGAGCCTCAAATTGCACCAGAGTTTGATGTTTTAGAGCTAGAGAAGCTTTTCTCTGCAAATGTTCCAAAACCCGTTGATTCTGGAGGGCGGCGCAAGTCCGTTGGATCTAAAACTGACAAAGTCCACTTGATTGACCTAAGGAGGGCTAATAATACTGAAATTATGCTCACTAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTATTGGCCATGGATGAGTCAGTATTAGATGTAGATCAGGTGGAAAATCTCATTAAGTTTTGTCCTACCAAAGAGGAGATGGAACTTTTGAAGGGGTACACGGGTGACAAGGAGAATTTGGGGAAGTGTGAACAGTATTTTTTGGAGCTCATGAAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTCTCTTTCAAGATTCAGTTTGGTTCTCAGGTTACAGAATTTAAGAAGAGTTTAAACACTGTGAACTCTGCCTGTGAGGAGGTCCGAAAATCTGTCAAACTGAAGGAGATCTTGAAGAAAATTCTTTATTTGGGTAATACGTTGAATCAGGGAACAGCAAGGGGATCTGCAGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGCGCTTCTAACAATAAGATGACACTGATGCATTATCTATGCAAGGTTATAGCTGAAAAGTCAACTGGACTCCTTGATTTTCACCTAGACCTTGTTAGCCTGGAAGCTGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAGATGCAGGCAATCATCAAGGGATTAGAAAAGGTTAAACAAGAGTTCACTGTATCTGAAAATGATGGACCCGTGTCAGAAGTTTTCCGTAAGACATTGAAGGAATTCATAATTGTGGCTGAGTCAGAGGTGGTATCTTTAACAAGCCTATATTCAGTGGTGGGTAGAAATGCAGATGCACTTGCACTATACTTTGGTGAGGATCCTGCTCGTTGCCCGTTTGAGCAGGTTACTGCAACTCTCTTAAATTTTATAAGGTTGTTTCGGAAAGCACATGAAGAGAACTGCAAACAAGCAGAGTTAGAGAAGAAGAAAGCTGAGAAAGAGGCTGGAATAGAAAAGGCCAAGGGCATTAACTTGACAAGGAAGAGTGCAAAAGATAGTTGA 3663 0.4502 MLVKIDIHCRVQGDVVLECIHLDEDYIREEMMFRVMFHTAFVRSNILMLSRDEIDILWDAKDQFPKDFKAEVLFLDADAIIPDLTTVTVSEDANETESADTESASPEEFYEVEEIFSNVIDAQEGKGEYDSHAFHDNAVDDANHKEIWKEEVDPHTFQDCTPDDGIHKQVDKMDSGINVVKDISVDDVNYKFNKSMDSDAVKDIAVDDGEIKLTSPSVTSDVMKTLEPKEVTVDVHRDLEVMQNKYDEDNEATKNELDSKAGQQMPDISKQKSGKLLPSTAKKQLPLNSKPVGDILAAKQKVKQQDTQGFQTKQAKPNAVTRWIPSNKGSYINSMHVYYPPSRNNSAPAALSNFTSPKEKMEDAKARSSSAPLVSAIVSIDMTNDQKSRKLTTSKSSGYSIAEIDANCPPSPLVSIKETSLQSVTQAQQLSSEQVLRPPPPPPPLPPTHARNSLHVFEPLSLQNVVSPQAHPSLLVTSSSLGGKESIAQPLTHPPPPPTLTSFTRPEVREYLLSRISPPLPPPPPPPPPPPFFGQNKKSLLPSLPLLKSVGSSIVGDTSGSLSPSLPTLPSWSPPPPPPPPPPPPPMPPLRYAVSSTPLPPPPPPPPPPPPPPPPSTTPPPPPSFPTSLTHKAPNPSLPLPSTASHEAPLAPPPPPPPPPSFSRAQPLPPPPPFSRAPPPLHGAPPTPSRPPLLPSSGVAPPPPPPPPPTSRAPPPPPPPIRGAPPPPPPMPRAPPPPPPPGGRGPPPPPPPGGRGPAPPPPPSAPGAPPPPRPPGGAPPPPPPLGSKGANLVADSRGRGRGYARSAGVGATASRRSSLKPLHWSKVTRALQGSLWEELQRHGEPQIAPEFDVLELEKLFSANVPKPVDSGGRRKSVGSKTDKVHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEQYFLELMKVPRVESKLRVFSFKIQFGSQVTEFKKSLNTVNSACEEVRKSVKLKEILKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNNKMTLMHYLCKVIAEKSTGLLDFHLDLVSLEAATKIQLKSLAEEMQAIIKGLEKVKQEFTVSENDGPVSEVFRKTLKEFIIVAESEVVSLTSLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFIRLFRKAHEENCKQAELEKKKAEKEAGIEKAKGINLTRKSAKDS 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00072 1220 MobiDBLite consensus disorder prediction 516 535 - -
Gabi4573g00072 1220 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 74 IPR035892 -
Gabi4573g00072 1220 Pfam C2 domain of PTEN tumour-suppressor protein 1 74 IPR014020 -
Gabi4573g00072 1220 MobiDBLite consensus disorder prediction 247 276 - -
Gabi4573g00072 1220 Coils Coil 1087 1107 - -
Gabi4573g00072 1220 Pfam Formin Homology 2 Domain 816 1180 IPR015425 -
Gabi4573g00072 1220 MobiDBLite consensus disorder prediction 435 449 - -
Gabi4573g00072 1220 SMART PTEN_C2_2 1 76 IPR014020 -
Gabi4573g00072 1220 MobiDBLite consensus disorder prediction 646 787 - -
Gabi4573g00072 1220 PRINTS Proline rich extensin signature 486 507 - -
Gabi4573g00072 1220 PRINTS Proline rich extensin signature 563 588 - -
Gabi4573g00072 1220 PRINTS Proline rich extensin signature 515 531 - -
Gabi4573g00072 1220 PRINTS Proline rich extensin signature 439 455 - -
Gabi4573g00072 1220 SUPERFAMILY Formin homology 2 domain (FH2 domain) 882 1207 - -
Gabi4573g00072 1220 PANTHER FORMIN-J 714 1213 - -
Gabi4573g00072 1220 Coils Coil 1181 1208 - -
Gabi4573g00072 1220 MobiDBLite consensus disorder prediction 568 629 - -
Gabi4573g00072 1220 MobiDBLite consensus disorder prediction 257 276 - -
Gabi4573g00072 1220 Gene3D Formin, FH2 domain 810 1192 IPR042201 -
Gabi4573g00072 1220 Gene3D - 1 80 - -
Gabi4573g00072 1220 SMART it6_source 435 1220 IPR015425 -
Gabi4573g00072 1220 ProSiteProfiles Formin homology-2 (FH2) domain profile. 809 1206 IPR015425 -
Gabi4573g00072 1220 MobiDBLite consensus disorder prediction 552 567 - -
Gabi4573g00072 1220 ProSiteProfiles C2 tensin-type domain profile. 1 77 IPR014020 -
Gabi4573g00072 1220 MobiDBLite consensus disorder prediction 509 811 - -
Gabi4573g00072 1220 MobiDBLite consensus disorder prediction 427 451 - -
Gabi4573g00072 1220 FunFam Formin-like protein 808 1192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00072 Gabi-Chr4573 584250 596365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00072 785 1220 FH2 protein (formin) Gene Family AT5G07740 79.405 0.0 707
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00072 - - gmx:100785475 760.755