Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00064 ATGGAGTCTGAAGAACTAATAAATCTGAGCAACAAAAAGAGTAATTGTGGTGGAAATAATAGCAAGAGTGGTGATGGTTTCGTTGACAGAAGCAAAGTTCGGATTTTGTTATGCGATAATGATTCAAAGAGTTCCGAAGAGGTTGTTACTCTTCTTTTGAGATGCTCTTATCAGGTTACTTCGGTAAGGTCACCAAGGCAAGTAATTGATGCGCTGAATGCAGAAGGGCAATTTATAGATATCATACTAGCTGAAGTTGACCTTCCAATAAAGAAAGGCATGAAGATGTTGAAGTTCATAGCACGAGATAAAGAATTCAGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAAGTATCTATTGTTGTCAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCGTTAGGCTCTAATGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGACGCATGATTGGACTTGCAGAGAACAGCATCTTGAATTATGACTTTGATCTGGTAGCATCGGACCCAAGTGATGCCAATACAAATAGTACCACCTTGTTTTCTGATGACATAGATGATAAGTCCAAAAGAAGCACTAATCCGGAGGAAGAAATATCAATCCAACAAGAACAAGAGGCTAGTATTGCCGCAGATATTATTGTTACTGAGGAGCTTCCAGATGCTCATGTATCCGAATGTCAGCCTGATGTGCCTGGAATTAGTGATCGCCGAACAGGTCATTTCTCATCTGCTCCAAAGAAGAGTGAACTAAGAATTGGAGAGTCATCGGCCTTTATCACTTATGTCAAAGCTCCATTGCCGAATAGCAACTTTGAAATGATTTCTCATGTTGGCAATAATGCAACTACACAAGGGATGGTGGAAGATAAGAATCAAGCATGTGCTCAATACAGGGTTAATGACCTTCAACCACACGAAGATGGAGTAACCTTTGAAAGCCATTCACAAGATGACTTACCCAGCAGCAATAGTGTCCCTGATTCTTTCTCTAATGAGAAATCTTGCACTCCGCCTGCATCAAGAGATGTTTCACGGCAAAATCATTACAAGGAAGAACTTCCTCAGGGTGTGGTGAATCCAAGAAATAGAAGTCGAGGTTCTGAGCTTGATGCATCTGGCATGCCTTCCCAACATGCTTATCCATATTATCTTTCAGGAGTTGTTAATCAAGTTATGATGCCATCGTCAGCGCAATTATATCAAAAGAATATCCAGGACCTGCAGAGTCATGCTAATTCATCTATGATTGCACAGTACAATCATCTTCCCCAATGTTTTCCTCATGCAACTGGGATGACATCCATCCCATATTATCCAATGAATATTTGCTTACAAGCTGGTGAGATTTCCCGAGCTCATTCATGGTCACCGTTAGGAAGTTCAAGTTCATGCGAAGTAAAATCAAGGAAATTTGATGGGAGACAAGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAGCGCTGTTTTGACAAGAAAATTAGGTATGTCAATAGGAAACAACTTGCTGAAAGGCGACCTCGTGTGAGGGGACAGTTTGTCAGAAAGTTGAATGATGTTAACGTGGATCTTAATGGACAGCCTGCTTCCACTGATTATGATAATGATGATGAAGATGAAGAAGACAACCCTGCCTAG 1662 0.4079 MESEELINLSNKKSNCGGNNSKSGDGFVDRSKVRILLCDNDSKSSEEVVTLLLRCSYQVTSVRSPRQVIDALNAEGQFIDIILAEVDLPIKKGMKMLKFIARDKEFSRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLGSNELLNLWTHMWRRRRMIGLAENSILNYDFDLVASDPSDANTNSTTLFSDDIDDKSKRSTNPEEEISIQQEQEASIAADIIVTEELPDAHVSECQPDVPGISDRRTGHFSSAPKKSELRIGESSAFITYVKAPLPNSNFEMISHVGNNATTQGMVEDKNQACAQYRVNDLQPHEDGVTFESHSQDDLPSSNSVPDSFSNEKSCTPPASRDVSRQNHYKEELPQGVVNPRNRSRGSELDASGMPSQHAYPYYLSGVVNQVMMPSSAQLYQKNIQDLQSHANSSMIAQYNHLPQCFPHATGMTSIPYYPMNICLQAGEISRAHSWSPLGSSSSCEVKSRKFDGRQAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNDVNVDLNGQPASTDYDNDDEDEEDNPA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00064 553 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 281 IPR045279 GO:0009736
Gabi4573g00064 553 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Gabi4573g00064 553 MobiDBLite consensus disorder prediction 190 204 - -
Gabi4573g00064 553 MobiDBLite consensus disorder prediction 315 383 - -
Gabi4573g00064 553 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
Gabi4573g00064 553 SUPERFAMILY CheY-like 29 158 IPR011006 -
Gabi4573g00064 553 MobiDBLite consensus disorder prediction 235 255 - -
Gabi4573g00064 553 MobiDBLite consensus disorder prediction 183 211 - -
Gabi4573g00064 553 MobiDBLite consensus disorder prediction 528 553 - -
Gabi4573g00064 553 ProSiteProfiles CCT domain profile. 482 524 IPR010402 GO:0005515
Gabi4573g00064 553 Pfam CCT motif 482 524 IPR010402 GO:0005515
Gabi4573g00064 553 MobiDBLite consensus disorder prediction 322 351 - -
Gabi4573g00064 553 SMART REC_2 33 148 IPR001789 GO:0000160
Gabi4573g00064 553 Gene3D - 33 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00064 Gabi-Chr4573 546469 552397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00064 22 543 Response Regulator Gene Family AT5G61380 49.918 2.73e-176 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gabi4573g00064 Response_reg 9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00064 K12127 - gmx:100786522 818.15