Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00061 ATGCAGATTCCGTATTTGGGCATCATGGAAACTGGGAGATTTCGCTCTGTTTCGAAATTCGTATTATGCGCCATTTCTGGAGCTCTCACGGGATGTTTTGCCATTGCTGGGGCCCTAACAGGGGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACTAAGAGTAGTTTTCTCCGGGGAGTTTCATTGGGTGCCATTGCCGGGGCTATACTCTCAGTGGAGGTGTTGGAAGCTTCCCGTGCCTACTGGTGTATGGAGCAAACTGGCTCACGGGGCGCCTCATCTATGGCAGATTTCATAGAGGAGCTTTTTCGCGGAAGGCTTGTGGAGGAATCACTTACACCTGCTATTTTAACTGCCTACAATTTGCAGTTTGAGCAGGTTGGCACGGCTAATACAGGCTATGATGAGATTCATGATGCTCATAGCTTAGTAGTATCCAGAGGATTGTCAGGGGATTCATTGAAGAAGTTACCCTACCATATGATCTTGAAGGACATGAAGACCGAGAATACTTGCTGTGTAGTATGTTTGCAGGACATTGAAGTGGGCGAAATTGCAAGAAGCTTACCTCGGTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCGTGTCCTGTCTGCAGACAGCATGTGTAG 657 0.4703 MQIPYLGIMETGRFRSVSKFVLCAISGALTGCFAIAGALTGAIAGALAAKATKSSFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGASSMADFIEELFRGRLVEESLTPAILTAYNLQFEQVGTANTGYDEIHDAHSLVVSRGLSGDSLKKLPYHMILKDMKTENTCCVVCLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQHV 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00061 218 SMART ring_2 173 214 IPR001841 -
Gabi4573g00061 218 Pfam Ring finger domain 173 215 IPR001841 -
Gabi4573g00061 218 CDD RING-H2_NIPL1-like 172 215 - -
Gabi4573g00061 218 ProSiteProfiles Zinc finger RING-type profile. 173 215 IPR001841 -
Gabi4573g00061 218 SUPERFAMILY RING/U-box 154 218 - -
Gabi4573g00061 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 218 IPR013083 -
Gabi4573g00061 218 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 218 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00061 Gabi-Chr4573 517216 521618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00061 16 218 C3H Transcription Factor Family AT1G74410 55.392 3.96e-74 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00061 - - gmx:100800105 356.681