Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00060 ATGCAGATTCCGTATTTGGGCATCATGGAAACTGGGAGATTTCGCTCTGTTTCGAAATTCGTATTATGCGCCATTTCTGGAGCTCTCACGGGATGTTTTGCCATTGCTGGGGCCCTAACAGGGGCTATAGCTGGTGCTTTAGCAGCTAAGGCTACTAAGAGTAGTTTTCTCCGGGGAGTTTCATTGGGTGCCATTGCCGGGGCTATACTCTCAGTGGAGGTGTTGGAAGCTTCCCGTGCCTACTGGTGTATGGAGCAAACTGGCTCACGGGGCGCCTCATCTATGGCAGATTTCATAGAGGAGCTTTTTCGCGGAAGGCTTGTGGAGGAATCACTTACACCTGCTATTTTAACTGCCTACAATTTGCAGGTTGGCACGGCTAATACAGGCTATGATGAGATTCATGATGCTCATAGCTTAGTAGTATCCAGAGGATTGTCAGGGGATTCATTGAAGAAGTTACCCTACCATATGATCTTGAAGGACATGAAGACCGAGAATACTTGCTGTGTAGTATGTTTGCAGGACATTGAAGTGGGCGAAATTGCAAGAAGCTTACCTCGGTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCGTGTCCTGTCTGCAGACAGCATGTGTAG 648 0.4707 MQIPYLGIMETGRFRSVSKFVLCAISGALTGCFAIAGALTGAIAGALAAKATKSSFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGASSMADFIEELFRGRLVEESLTPAILTAYNLQVGTANTGYDEIHDAHSLVVSRGLSGDSLKKLPYHMILKDMKTENTCCVVCLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQHV 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00060 215 Pfam Ring finger domain 170 212 IPR001841 -
Gabi4573g00060 215 SUPERFAMILY RING/U-box 151 215 - -
Gabi4573g00060 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 215 IPR013083 -
Gabi4573g00060 215 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
Gabi4573g00060 215 CDD RING-H2_NIPL1-like 169 212 - -
Gabi4573g00060 215 SMART ring_2 170 211 IPR001841 -
Gabi4573g00060 215 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 215 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00060 Gabi-Chr4573 517215 521621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00060 16 215 C3H Transcription Factor Family AT1G74410 56.219 5.66e-76 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00060 - - gmx:100800105 345.125