Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00058 ATGGAAAACAACGTTTCAGTCCTATGTAAGCAAGAGAATCAGATGGATTTGCCACCTGGATTTCGGTTTCACCCAACTGATGAAGAGCTTATAAGCCATTACCTTTACAAGAAGGTCATTGATACCAACTTCTCTGCCAGGGCCATTGGAGAGGTAGACCTCAACAAGTCTGAGCCTTGGGATTTGCCATGGAAAGCGAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGCGTGAGAGACAGAAAATACCCAACTGGGTTGAGGACTAATAGAGCCACAGAAGCAGGATACTGGAAGGCCACAGGGAAAGACAAGGAGATTTTCAGAGGAAAATCGCTGGTTGGAATGAAGAAAACTCTGGTTTTTTATAAAGGAAGAGCACCCAAAGGTGAAAAAAGCAACTGGGTCATGCACGAATACAGACTCGATGGTAAATTCTCTGTTCAAAACCTCCCTAAAACTGCAAAGAACGAGTGGGTTATTTGTAGGGTGTTTCAAAAGAGTTCAGCCGGTAAGAAAACTCATATTTCTGGGATAATGAAGTTGGACTCTTTTGGAAATGAATTGGGTTCTTCTGGTCTACCACCCCTCACAGATTCCTCACCTTCCATTGACAAGACCAAATCACTTTCGGGTTCAGTTTGCGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGGAGGGATCTTTGATTCATTCACAAACTCCATCTATGGGGTTTCTTCAAATCCATTAGACATTCTTCCAAGAATGCCACCTTCTGGCTCATTCTACTCTGCTCAAGGTGTTCAAGTCCCAGCTAATTTGCCATTCCCCGGATCTGTTTACAGTATGCAGGACCAGACAGTTTTGAGAGCCTTACATGAAAACAATGGATCAAACTTGATCAATGGTTTCAAGACAGATAGGGAAATTGTCAGTGTTTCACAGGAAACAGGTCTCACTACTGACATGAATGCCGAAACCTCTTCGGTGATATCGAATTTTGATATGGGCAGGAGGTCCTTTGACAATCAGCATCATCCATCAACTTCTGTTGCAGCAGTGGACCTTCATAGTTTATGGAATTACTGA 1083 0.4284 MENNVSVLCKQENQMDLPPGFRFHPTDEELISHYLYKKVIDTNFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLDGKFSVQNLPKTAKNEWVICRVFQKSSAGKKTHISGIMKLDSFGNELGSSGLPPLTDSSPSIDKTKSLSGSVCVPCFSNPIDVQRNQGGIFDSFTNSIYGVSSNPLDILPRMPPSGSFYSAQGVQVPANLPFPGSVYSMQDQTVLRALHENNGSNLINGFKTDREIVSVSQETGLTTDMNAETSSVISNFDMGRRSFDNQHHPSTSVAAVDLHSLWNY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00058 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 273 - -
Gabi4573g00058 360 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Gabi4573g00058 360 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Gabi4573g00058 360 FunFam NAC domain-containing protein 100-like 26 171 - -
Gabi4573g00058 360 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Gabi4573g00058 360 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00058 Gabi-Chr4573 488094 489858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00058 15 360 NAC Transcription Factor Family AT5G07680 59.942 8.64e-140 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4573g00058 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00058 - - gmx:100170719 605.905