Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00057 ATGGCGTTTCTGGGCCTTCTCTTGGTGGGGATTCTGTTGGGATCAGGTGTTTATGCAGACGGTGATGGTTGGATGGATGCTCATGCAACCTTCTATGGAGGGGGTGATGCCTCTGGCACAATGGGTGGAGCTTGTGGATATGGAAACTTATATAGCCAGGGCTATGGGACTGACACGGCTGCTTTAAGCACAGCATTGTTCAACAATGGTTTTAGCTGCGGGGCTTGCTTCGAGATTAAGTGTGTCAATAACCAAAGGTGGTGCCTTCAAGGCTCAATTGTGGTCACTGCCACCAATTACTGCCCACCAAACAATGCCCTCCCAAATGATGCAGGTGGATGGTGCAACCCACCCCTTAAACATTTTGATCTCTCTCAGCCTGTCTTCCAACAAATAGCTCAATACAGTGCTGGCATAGTACCCGTAGCTTACAGAAGGGTCCCATGTCAAAAGAGAGGAGGCATTAGATTCACAATGAATGGCCATTCTTATTTCAACCTAGTCCTAATCACCAACGTTGGTGGTGCTGGTGATGTTCAAGCAGTTTCCATCAAAAGTTCAAGAACTAATTGGCAACCTATGTCTAGGAACTGGGGTCAGAACTGGCAAAACAACGCTTACCTCAATGGACAAAGCATATCATTTAAGGTTACCACTAGTGACGGGCACACCTTGGTCTCTTACGATGTTGTCCCACATAGCTGGTCCTTTGGCCAGACATTCACAGGGCAACAATTCCCTTAA 744 0.4731 MAFLGLLLVGILLGSGVYADGDGWMDAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTAALSTALFNNGFSCGACFEIKCVNNQRWCLQGSIVVTATNYCPPNNALPNDAGGWCNPPLKHFDLSQPVFQQIAQYSAGIVPVAYRRVPCQKRGGIRFTMNGHSYFNLVLITNVGGAGDVQAVSIKSSRTNWQPMSRNWGQNWQNNAYLNGQSISFKVTTSDGHTLVSYDVVPHSWSFGQTFTGQQFP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00057 247 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Gabi4573g00057 247 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Gabi4573g00057 247 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Gabi4573g00057 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Gabi4573g00057 247 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Gabi4573g00057 247 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Gabi4573g00057 247 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Gabi4573g00057 247 SMART dpbb_1 59 144 IPR007112 -
Gabi4573g00057 247 Gene3D - 15 150 IPR036908 -
Gabi4573g00057 247 Gene3D - 154 246 IPR036749 -
Gabi4573g00057 247 CDD DPBB_EXPA_N 23 149 - -
Gabi4573g00057 247 Pfam Lytic transglycolase 59 144 IPR009009 -
Gabi4573g00057 247 FunFam Expansin 154 246 - -
Gabi4573g00057 247 SUPERFAMILY Barwin-like endoglucanases 23 172 IPR036908 -
Gabi4573g00057 247 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Gabi4573g00057 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 154 IPR007112 -
Gabi4573g00057 247 PANTHER EXPANSIN-A15 15 246 IPR002963 GO:0009664
Gabi4573g00057 247 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Gabi4573g00057 247 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Gabi4573g00057 247 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Gabi4573g00057 247 PRINTS Expansin signature 93 103 IPR002963 GO:0009664
Gabi4573g00057 247 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Gabi4573g00057 247 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Gabi4573g00057 247 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Gabi4573g00057 247 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Gabi4573g00057 247 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Gabi4573g00057 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Gabi4573g00057 247 FunFam Expansin 13 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00057 Gabi-Chr4573 454878 456068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00057 1 246 Expansin Gene Family AT2G03090 73.600 5.64e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00057 - K20628 gmx:100816718 450.284