Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00054 ATGGGAAGAGTTAAACTGAAGATAAAGAAATTAGAGAGCACAAGCAACCGACATGTGACTTATTCGAAGCGGAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTATGTGATATAGATATTGTTCTTCTCATGTTTTCTCCAACAGGAAAGTCTACATTGCTACAAGGAGAGCGCAGCAATATTCAGGAGATCATTGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAGAGTCTTGAAGCACTGAAGAAAACCTTCAGGAAGCTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCAAGCAGTCAAACCATGGAGGAATTAACTCATCAAGTGAGGGTTTTACAAGCTCAGCTCTCAGAAGTACATCAGAGACTGAGCTACTGGAGTAATCTGGAGAAGATTGATAACTTAGAACATCTTCGGCAAATGGAAGACTTTCTCAGGGAATCAATCAATCGAGTGTGTCTACAGAAGGAAGATTTAGGAAAGCACCAACTAATGTCTGTTGAATGTGCCACCCAGGAAGGGATGACTTTACCCATGATGATGGCTAGTCTGCAAGAATCTCAACCCCTGTCTTGGCTTTTGAATAGTGATAACCATCAGTTGATGTTACCCAGTGAACCAAAATTTCTGCCATTTAGTGGTGATAATACCAACAGAGATGCTGAGTGCTCCACTGACATTTCACTCCCAGGCTATTCTGGTTATATTGGGAGTGGCAAACTTGAGGTTGGTGGCTCTTCCCAAGTCAATACTTTGGGTCAGGGAGGTGGTGCCTTGAACGAGTTAAATGGAACTGTTTACTCAAATGTACAGCGTTGTGAGCAGTTTGCATACCCTCCTCCACCAGATATTGAGGAAGTGAAGCATCACCAAACAATGAACAGTAAAACAAACACTGTGGATTACCAAGTTCATAACAGCTTTGATCTGCCCAGATCACTGTTTGAAAATGGACATCAGTTTTGGAATCCTGCTTCTGGGTCTTGTGAGATTGCCATGTATAATGAGAATGGCTACCATAGGTAA 1062 0.4115 MGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKSTLLQGERSNIQEIIAKFAQLSPQERAKRKMESLEALKKTFRKLDHDVKIQDFLGSSSQTMEELTHQVRVLQAQLSEVHQRLSYWSNLEKIDNLEHLRQMEDFLRESINRVCLQKEDLGKHQLMSVECATQEGMTLPMMMASLQESQPLSWLLNSDNHQLMLPSEPKFLPFSGDNTNRDAECSTDISLPGYSGYIGSGKLEVGGSSQVNTLGQGGGALNELNGTVYSNVQRCEQFAYPPPPDIEEVKHHQTMNSKTNTVDYQVHNSFDLPRSLFENGHQFWNPASGSCEIAMYNENGYHR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00054 353 Coils Coil 77 97 - -
Gabi4573g00054 353 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Gabi4573g00054 353 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi4573g00054 353 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi4573g00054 353 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi4573g00054 353 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Gabi4573g00054 353 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Gabi4573g00054 353 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 194 - -
Gabi4573g00054 353 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi4573g00054 353 Coils Coil 114 134 - -
Gabi4573g00054 353 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 53 IPR002100 GO:0003677|GO:0046983
Gabi4573g00054 353 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi4573g00054 353 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00054 Gabi-Chr4573 442692 448552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00054 1 303 Type I MADS-box Gene Family AT2G03060 47.205 2.43e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi4573g00054 SRF-TF 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00054 - - pvu:PHAVU_003G189100g 605.52