Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00042 ATGAAAAAGAAGCAGGTGGTGGTTGTGAAAAGAGATGGTTGCAACACTTCATCTTCAGCGTTGAGAAATATTAGATATGGGGAGTGCCAGAAGAATCATGCAGCTAACAGTGGAGGTTATGCTGTGGATGGATGCAGAGAGTTCATGGCTAGCGCAGAGGAGGGAACAAGTGGTGCGCTTATGTGTGCGGCTTGTGGTTGCCACAGGAACTTTCACAAAAGGGAAGTGCAGATTGCAAACTGA 243 0.4691 MKKKQVVVVKRDGCNTSSSALRNIRYGECQKNHAANSGGYAVDGCREFMASAEEGTSGALMCAACGCHRNFHKREVQIAN 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00042 80 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 26 75 IPR006456 -
Gabi4573g00042 80 Pfam ZF-HD protein dimerisation region 24 76 IPR006456 -
Gabi4573g00042 80 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 25 76 IPR006456 -
Gabi4573g00042 80 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00042 Gabi-Chr4573 336755 337683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00042 1 76 Zinc finger-homeobox gene family AT1G18835 68.421 3.78e-30 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi4573g00042 ZF-HD_dimer 6.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00042 - - tcc:18604683 131.724