Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00041 ATGGGGAGGCCACCTTGCTTTGACAAAATTGGGATTAAGAAAGGACCTTGGACTCCAGAGGAAGACATCACCTTGGTCTCTTACATTCAAGAACACGGACCAGGGAATTGGAGATCAGTTCCCATCAATACTGGTTTGATGAGATGCAGTAAAAGCTGCAGACTTAGATGGACTAACTACCTTCGACCAGGTATCAAACGAGGTAACTTCACTGATCATGAAGAGAAGATGATAATCCACCTTCAAGCTCTTTTGGGTAACAGATGGGCTGCTATAGCTTCCTATCTTCCACAGAGGACAGACAATGACATAAAAAACTTTTGGAATACCCATTTGAAGAAGAAGCTCAACAAACAACAAACTGGGACTGAAGAGGGTCTTGAAAAAGAAGGACATTCTAAATCTTCACATGAAAAGGGTCAATGGGAGAGAAGGCTACAAACAGATATTCAAATGGCCAAGCAAGCTTTATCTGATGCTTTGTCCCTTCAAAAACCAAACCATATTTTGCCTGATACAAATCCTTCAGATTCTCATCACCTAACCTTTGATACAAAACCAAACCATGCATCATCCCCATACGCATCAAGCTGCGAAAACATAGCTCGATTGCTTGAAAACTGGACGAAATCACCAAAGTTAACTGATACAAATTCAGGATATTCCTTCAACAATAACATGGTCACGACAGGATCTAGTTCTAGTGAGGGAGCACTGAGCACCACCAACGCATGTACACCAGATCATGGTTTTGATTCCTTAATGACCTTCAACTCCTTCAAATCTGATGGCTCAGTTGAAGAGAACAACAACTTCACAACGAGGGTTGGTCTCTTCCAAGATGAAAGGAGGCCAAACTTGGAGACACAAGTCCCTCTTACGTTGCTTGAGAAGTGGCTTTTTGATGATGGAGCAGTTCAATGTCATGAAGATCTAATGAATATGTCACTGGAAGAAAGTACCGCAAGTTTGTTTTAG 978 0.4172 MGRPPCFDKIGIKKGPWTPEEDITLVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNFWNTHLKKKLNKQQTGTEEGLEKEGHSKSSHEKGQWERRLQTDIQMAKQALSDALSLQKPNHILPDTNPSDSHHLTFDTKPNHASSPYASSCENIARLLENWTKSPKLTDTNSGYSFNNNMVTTGSSSSEGALSTTNACTPDHGFDSLMTFNSFKSDGSVEENNNFTTRVGLFQDERRPNLETQVPLTLLEKWLFDDGAVQCHEDLMNMSLEESTASLF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00041 325 CDD SANT 69 112 IPR001005 -
Gabi4573g00041 325 SMART sant 13 63 IPR001005 -
Gabi4573g00041 325 SMART sant 66 114 IPR001005 -
Gabi4573g00041 325 Gene3D - 69 147 - -
Gabi4573g00041 325 CDD SANT 16 61 IPR001005 -
Gabi4573g00041 325 FunFam MYB-related transcription factor 13 66 - -
Gabi4573g00041 325 MobiDBLite consensus disorder prediction 117 143 - -
Gabi4573g00041 325 Gene3D - 13 66 - -
Gabi4573g00041 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Gabi4573g00041 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi4573g00041 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gabi4573g00041 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi4573g00041 325 MobiDBLite consensus disorder prediction 116 143 - -
Gabi4573g00041 325 MobiDBLite consensus disorder prediction 173 193 - -
Gabi4573g00041 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi4573g00041 325 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi4573g00041 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi4573g00041 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gabi4573g00041 325 FunFam Transcription factor MYB30 68 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00041 Gabi-Chr4573 309925 311584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00041 1 317 MYB Transcription Factor Family AT5G62470 50.275 2.37e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4573g00041 Myb_DNA-binding 4.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00041 K09422 - qsu:111987893 449.514