Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00029 ATGGGATCAGAGAGTCTGGCTCCGATGGTTGAGACATCAAAAAACAGGTCTTCTCCTGGTAAAATGAAGCAAGGGAAAGTTCCTAAGAGAGTTCACAAGGCTGAAAGGGAGAAAATGAAGCGTGAACATTTGAATGAACTCTTTCTTGATCTTGCCAATGTACTTGATCTAAATGAGCAGAACAATGGAAAGGCTTCTACATTGTGTGAAGCTTCTAGGCTGCTAAAGGACTTGCTCTGTCGGATTGAGTCCCTCAAGAAGGAAAACGTGTCTCTGTTGTCTGAATCTCGTTATGTGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCCTAGAATCTCAAATTGAGAAACTTCAAGATGAGATACAGGCAAGAGTGGTTCAGTCTAAACCTGACCTGAATGCACCTCCTCAATTGGAGCTTGAGCCACCAGAGCAGACAAATTTTCCAGGACATAGTCTCCAGTTGCCCACCATAGAACCTACCTTGCAGCAGGGACCTACGGTTTTGGTTGTCCCCTTTCATCCTGATCTCCAAGCTGCTTTTCCAGCTCCTAATGTTGCTGAGCTCACGCCTAAACCTACACCTGTTGTCAGTAAACCACATCCCAGGTATCCCACACCAGCAGATTCATGGCCATCAAAGCTGCTTGGAGATCAACCAACTTCAAGTTAA 681 0.4508 MGSESLAPMVETSKNRSSPGKMKQGKVPKRVHKAEREKMKREHLNELFLDLANVLDLNEQNNGKASTLCEASRLLKDLLCRIESLKKENVSLLSESRYVTMEKNELKEENCSLESQIEKLQDEIQARVVQSKPDLNAPPQLELEPPEQTNFPGHSLQLPTIEPTLQQGPTVLVVPFHPDLQAAFPAPNVAELTPKPTPVVSKPHPRYPTPADSWPSKLLGDQPTSS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00029 226 Coils Coil 75 95 - -
Gabi4573g00029 226 Coils Coil 103 123 - -
Gabi4573g00029 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 78 IPR011598 GO:0046983
Gabi4573g00029 226 PANTHER TRANSCRIPTION FACTOR BHLH47 9 225 - -
Gabi4573g00029 226 MobiDBLite consensus disorder prediction 1 20 - -
Gabi4573g00029 226 MobiDBLite consensus disorder prediction 187 226 - -
Gabi4573g00029 226 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4573g00029 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 92 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00029 Gabi-Chr4573 230353 233273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00029 15 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 50.435 1.90e-66 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00029 - - mtr:11438092 367.081