Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00021 ATGGGAAATTGCTTTGGAACTCGTTCCCAGGTTGATAACACTTGGAGCTCCCAACCCAGTTTTGATGTTACAAAAGTTCATCCTAAAAGCACCCATTTGTTAGCTCATTCAAGTGCAGCAGTGCATAGATACAGTGATGAAGGTAAACCTGAGATTCTCCCAACTCCAAGACCTGAAGGGGACATATTTTCGTCCCCACATTTAAAAGCCTTCACATTCAATGATCTTAAGAATGCCACCAGAAAATTTTGTCCTGATAATCTACTTGGACAAGGGGGATTTGGTCATGTCTATAAAGGGTGGATTTCTGGAATGGTTGTAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGCTGTCTGAACTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTTAAACTTATTGGATACTGTCTTGATGGGGATAACCGGCTTCTAGTGTACGAGTACTTGCCCAACGGAAGCTTGGAAAATCATCTATTTCGCAAGGGTGCAAAACCACTTCCTTGGGCAGCAAGAATCAAAGTTGCTATTGGTGCTGCTAGAGGTCTCACCTTCCTACATGACTCTAAACAACATGTTATCTACCGTGATTTCAAGACTTCTAATATTTTATTAGATTCGGATTTTAATGCAAAACTATCAGACTTTGGATTGGCCAAAGCAGGGCCTACTGGTGATCATTCTCATGTTTCCACGCAAGTCCTGGGAACTCACGGCTATGCTGCTCCTGAATATATCGCTACAGGTCGGCTGACTGCAAAGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTTTTGATAAAACAAAATCTGGAGTGGAACATAATCTGGTAGATTGGGCAAAACCCTATTTGGGTGATAGGAGGAAGTTGTTCAGGATTATGGACACCAAGTTAGAAGGGCAATACCCACAGAGAGCAGCTTATACAACTGCAATCCTAGCATTACAATGTATTAGTGAGGCCAAGATTAGACCACAGATGTCTGAGGTTTTGGCTACCTTAGAACAGCTGCCAGTCATCAGACATTCAGCTAGTCCATCTAGACCAGAGGAAAAGTCATCTCAAGTCCTATGA 1125 0.4267 MGNCFGTRSQVDNTWSSQPSFDVTKVHPKSTHLLAHSSAAVHRYSDEGKPEILPTPRPEGDIFSSPHLKAFTFNDLKNATRKFCPDNLLGQGGFGHVYKGWISGMVVAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLIGYCLDGDNRLLVYEYLPNGSLENHLFRKGAKPLPWAARIKVAIGAARGLTFLHDSKQHVIYRDFKTSNILLDSDFNAKLSDFGLAKAGPTGDHSHVSTQVLGTHGYAAPEYIATGRLTAKCDVYSFGVVLLELLSGRHAFDKTKSGVEHNLVDWAKPYLGDRRKLFRIMDTKLEGQYPQRAAYTTAILALQCISEAKIRPQMSEVLATLEQLPVIRHSASPSRPEEKSSQVL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00021 374 FunFam Serine/threonine-protein kinase BIK1 54 157 - -
Gabi4573g00021 374 Gene3D Phosphorylase Kinase; domain 1 56 157 - -
Gabi4573g00021 374 SUPERFAMILY Protein kinase-like (PK-like) 61 352 IPR011009 -
Gabi4573g00021 374 ProSiteProfiles Protein kinase domain profile. 83 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4573g00021 374 Gene3D Transferase(Phosphotransferase) domain 1 158 368 - -
Gabi4573g00021 374 CDD STKc_IRAK 89 354 - -
Gabi4573g00021 374 ProSitePatterns Protein kinases ATP-binding region signature. 89 111 IPR017441 GO:0005524
Gabi4573g00021 374 FunFam Serine/threonine-protein kinase PBS1 158 371 - -
Gabi4573g00021 374 Pfam Protein kinase domain 87 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4573g00021 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gabi4573g00021 374 PANTHER OS01G0588500 PROTEIN-RELATED 37 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00021 Gabi-Chr4573 171954 174966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00021 69 371 Glycoside Hydrolase AT3G07070 50.000 3.15e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi4573g00021 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00021 - - gmx:100791844 595.89