Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00019 ATGATAAATCCTGCTCCTGCGAGCTTCTGGACTCAGGCAAACGCGCTTCTTAGGAAGAATCTAACCTTCCAGAAACGGAACGTGAAGACAAACGTTCGGTTAATACTGTTCCCGTTGATCCTGTGCGTTTTGCTGGTTGTCCTGCAAGGTTTAATCGACGCTGAATTGGATAAGCCTGCGAACAAATGTGGTTGCGTTTGTGCCAACAACAAAACAAAAGGCGCTCAGTGCCACGACTCAGAGAAGCTTTGTGGGGTCCAGTATTCGGATTCGGGTCAAGCTGCACTCTGTGCTATTCCCAACCCACCCGAATGGCCTCCTCTGTTGCAACTTCCGGCTCCTCCGAACCGAGCCGTACGAACCCCTCTTCTTCCCTTTTCAGATTTGCCAGATGCGTCATGCAGGAGAACCGGGTCGTGTCCTCTAACTACGCTCTTCACCGCCAATAATCACTCTTTTGGAGAAATTGTGTCTGGAAATATGTTCCCAAGTGAATTCAGTATAAATGACTCTGATATCATGGCTAGTTTGGCCACAAATGTTCTGGGATCTGAATCAACGCCCGAGAGCAGCAATTTTATTGGATCTGCTTTCTCTTCGGGTCTTCCAATTTATTACCTACAAACTGAGTGCACGCTGAACTCTGGATTCTCCTTTCCTTTCCAGATAGCTGGCGATACCATGGAGCAAGAGGTCAGTTGTGCTCAGGGTTTACATTTATGGCGTAATAGTTCTTCTGAGATCAACAATGAGGTATATAAAGGTTACCAAAGAGGTAACACAGAAGGACAGGTCAATGAAATAGTTTCAGCTTTTGATTTTCTAAATTCAAATGAGAATAGATTTAATGTCAGCATATGGTACAACTCAACCTACAACATGGGTGACACTGGATTTCGTTCTATTGCATTGTTGCGGATTCCTCGTTCTGTAAATCTGATATCAAATGCCTACCTGCAGTTTCGGCTTGGACCCGGTACCAAAATGTTGTTTGAGTTTGTAAAGGAAATGCCAAAATCTGAGACCCCAATTAGGATTGAGATAGCTTCTCTTCTGGGCGGTCTGTTCTTTACATGGGTCATCCTGCAACTTTTTCCTGTTGTTCTGACATCACTGGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCGTATGGTTATTTTCTTGCCATATCCATTATCTACATGTTGTGTTTTGTGATATTTGGCTCTCTTTTAGGACTAAAATTCTTTACATTGAATGACTACAGCATCCAATTTGTGTTTTATTTCATCTATATAAACTTGCAAATTTCGCTGGCATTTCTGGTGGCTTCCATGTTTACAAATGTTAAGACTGCTACAGTAACTGCATATATAGGTGTCTTTGGAACAGGGCTATTAGCCGGCTTCCTTTTTCAATTTCTTGTTCAAAATACATCATTTCCAAGAGGGTGGATCATTTTAATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTTGCACAATTTGCCTCAGATGGGAGTACTTTGGGGACCGATGGTATGCGGTGGCAGGATCTAAGTGATAGAACCAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGATAGTAGTGTTTTTTGGTGCCTATTACATCGATCAAGTATTGTTGTCAGGAAGTGGAAAAAGTCCTCTTTTCTTCTTGAAAAGATTTCAAAAAATGCCTCCTCCGTCTTTCCAGAAGCCCAGTGTCCGAAGGCTGGGGTCAAAAGTTTTGGTTCAGATGGAGAAACCTGATGTCATCCAAGAGAGAGAGAAGGTAGAGCAGCTGCTACTTGAATCAACTATTAATCATGCAATTGTATGCGATGGCCTAAAAAAAGTCTATCCAGGGAGGGATGGAAATCCAGAGAAATTTGCAGTAAGAGGGTTGTTCCTTGTTGTGCCTCAAGGGGAATGTTTTGGTATGCTTGGTCCCAATGGTGCTGGCAAGACTTCTTTTATCAGTATGATGATTGGTCTCACAAAGCCAACCTCTGGTACGGCATTTGTTCAAGGCCTGGACATAAGAACTCATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAGCACGACTTGCTCTGGGAAAATTTGACAGGTAGAGAGCACCTACTTTTTTATGGAAGACTTAAAAATCTTAAAGGTTCGGTCTTGACACAAGCAGTAGAAGAATCTTTGAAGAGTTTGAACCTTTTTCATGGGGGAGTTGCTGATAAACAAGCTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCCAGAGTTGTTTATATGGATGAGCCAAGTACCGGGCTAGACCCTGCTTCAAGAAAAAGCTTATGGAATGTTGTTAGGCGCGCAAAACAGGATCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAAGCCCTATGTGATCGATTAGGAATATTTGTAAATGGTAGCTTGCAGTGCGTAGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAACTTATGTGTTCACGATGACAACATCTTCGGAGCATGAGAAGGATGTGGAGAACATGGTGCAGCAGCTGGCTCCAAATGCTAACAAGATATACCATCTCTCTGGTACCTTGAAGTTTGAGCTGCCAAAAGAGCAAGTAAGAATAGCAGATGTATTCCGAGCTGTTGAGAGAGCAAAGAGAAACTTCACTGTTTCTGCATGGGGTTTAGTTGACACCACATTGGAAGATGTCTTCATTAAGGTAGCACGTGAGGCTCAGGCATTTGACACCTTGTCATAA 2853 0.4273 MINPAPASFWTQANALLRKNLTFQKRNVKTNVRLILFPLILCVLLVVLQGLIDAELDKPANKCGCVCANNKTKGAQCHDSEKLCGVQYSDSGQAALCAIPNPPEWPPLLQLPAPPNRAVRTPLLPFSDLPDASCRRTGSCPLTTLFTANNHSFGEIVSGNMFPSEFSINDSDIMASLATNVLGSESTPESSNFIGSAFSSGLPIYYLQTECTLNSGFSFPFQIAGDTMEQEVSCAQGLHLWRNSSSEINNEVYKGYQRGNTEGQVNEIVSAFDFLNSNENRFNVSIWYNSTYNMGDTGFRSIALLRIPRSVNLISNAYLQFRLGPGTKMLFEFVKEMPKSETPIRIEIASLLGGLFFTWVILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISIIYMLCFVIFGSLLGLKFFTLNDYSIQFVFYFIYINLQISLAFLVASMFTNVKTATVTAYIGVFGTGLLAGFLFQFLVQNTSFPRGWIILMELYPGFALYRGLYEFAQFASDGSTLGTDGMRWQDLSDRTNGMKEVLIIMFAEWIVVFFGAYYIDQVLLSGSGKSPLFFLKRFQKMPPPSFQKPSVRRLGSKVLVQMEKPDVIQEREKVEQLLLESTINHAIVCDGLKKVYPGRDGNPEKFAVRGLFLVVPQGECFGMLGPNGAGKTSFISMMIGLTKPTSGTAFVQGLDIRTHMDGIYTSMGVCPQHDLLWENLTGREHLLFYGRLKNLKGSVLTQAVEESLKSLNLFHGGVADKQAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRKSLWNVVRRAKQDRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNPKELKARYGGTYVFTMTTSSEHEKDVENMVQQLAPNANKIYHLSGTLKFELPKEQVRIADVFRAVERAKRNFTVSAWGLVDTTLEDVFIKVAREAQAFDTLS 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00019 950 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524|GO:0016887
Gabi4573g00019 950 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 865 IPR003439 GO:0005524
Gabi4573g00019 950 Pfam ABC-2 family transporter protein 348 558 IPR013525 GO:0016020|GO:0140359
Gabi4573g00019 950 Gene3D - 617 895 IPR027417 -
Gabi4573g00019 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 856 IPR027417 -
Gabi4573g00019 950 SMART AAA_5 658 842 IPR003593 GO:0016887
Gabi4573g00019 950 FunFam ABC transporter A family member 7 617 893 - -
Gabi4573g00019 950 Pfam ABC transporter 654 794 IPR003439 GO:0005524
Gabi4573g00019 950 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 599 944 IPR026082 GO:0016020|GO:0055085|GO:0140359
Gabi4573g00019 950 CDD ABC_subfamily_A 632 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00019 Gabi-Chr4573 150982 166491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00019 637 876 Calmodulin-binding Proteins AT2G36910 23.482 1.58e-12 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00019 - - gmx:100792897 1534.62