Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4573g00001 ATGGCGGGTGGGAGGGTCTTCACCACTTCTCATGCTAATATTTCCAACATGAATAATAATTGTTTGCTTCAGAATCAAACTGGTCGTGCCACTTCTGAACCTCTTGATTCTCTTTTCCTTTCTACTTCTGCTCCTTTCCTCGGTTCAAGATCCATGGTGAGTTTTGAAGATGTTCAAGGAGGGAAGCGGTGTAATAATAATAGGTCTTTCTTCCAAGCGTTTGAAATGGATGAAAATGGTGATGATGGGATGGACGAATTATACTTTCATCAAGCGGAGAAGAAGCGGCGTCTCTCAGCTGAACAAGTTCAGTTTCTTGAGAAAAGCTTCGATGAGGAGAACAAGCTCGAACCCGAGAGGAAAACCAAGCTAGCCAAGGACCTTGGTTTGCAGCCACGACAAGTTGCTATTTGGTTTCAGAACCGCCGAGCAAGGTGGAAGACAAAACAGCTTGAGAAGGATTATGAAGAACTGCATGATAACTATGAGAGTCTTAAGACCAACTATGACAACCTCCTCAAGGAGACAGACAAGTTAAAAGCTGAGGTAGCGAACCTCACTGAAAAGGTGATTGCAAGAGAGAAACAAGGGGGGAACTTTAAACAGGGTGAAAGTGAAACAAACGAATTGCAGGAAGCACCCCAAAAGCCTTTACTTGATTCAGTTTCGGAGGGTGAAGGATCCAAAGTCTCTGTTGGGGGTTGTAAACAGGAAGATATTAGTTCAGCAAGGAGTGACATTTTGGATTCTGATAGCCCTCATTACACGGATGGTGTTCACTCTGCAGTGTTAGAGCCAGGTGATTCTTCTTATGTATTTGAACATGATCAATCAGACCAATCACAGGATGAAGAAGACAACTTGAGCGAGACCCTTTTGCCTTCATACATCTTTGCAAAACTTGAAGATGTGGATTACTCCGACCAGCCAGAAAGTTCGTGTAATTTTGGATTTCCGGAGGAAGATCATCATGCCCTTTGGGAATGGTCTTTCTGA 996 0.4347 MAGGRVFTTSHANISNMNNNCLLQNQTGRATSEPLDSLFLSTSAPFLGSRSMVSFEDVQGGKRCNNNRSFFQAFEMDENGDDGMDELYFHQAEKKRRLSAEQVQFLEKSFDEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEELHDNYESLKTNYDNLLKETDKLKAEVANLTEKVIAREKQGGNFKQGESETNELQEAPQKPLLDSVSEGEGSKVSVGGCKQEDISSARSDILDSDSPHYTDGVHSAVLEPGDSSYVFEHDQSDQSQDEEDNLSETLLPSYIFAKLEDVDYSDQPESSCNFGFPEEDHHALWEWSF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4573g00001 331 Gene3D - 144 193 - -
Gabi4573g00001 331 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 79 250 IPR045224 GO:0003700
Gabi4573g00001 331 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Gabi4573g00001 331 MobiDBLite consensus disorder prediction 195 289 - -
Gabi4573g00001 331 Pfam Homeobox associated leucine zipper 149 190 IPR003106 GO:0006355|GO:0043565
Gabi4573g00001 331 Coils Coil 141 189 - -
Gabi4573g00001 331 CDD homeodomain 94 150 IPR001356 GO:0003677
Gabi4573g00001 331 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Gabi4573g00001 331 FunFam homeobox-leucine zipper protein ATHB-6-like 97 143 - -
Gabi4573g00001 331 Gene3D - 97 143 - -
Gabi4573g00001 331 SUPERFAMILY Homeodomain-like 80 151 IPR009057 -
Gabi4573g00001 331 PRINTS Lambda-repressor HTH signature 129 145 IPR000047 GO:0003677
Gabi4573g00001 331 PRINTS Lambda-repressor HTH signature 120 129 IPR000047 GO:0003677
Gabi4573g00001 331 Pfam Homeodomain 94 147 IPR001356 GO:0003677
Gabi4573g00001 331 SMART HOX_1 92 153 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4573g00001 Gabi-Chr4573 12612 14990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4573g00001 38 276 Homeobox Transcription Factor Family AT3G01470 44.000 2.02e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi4573g00001 Homeodomain 6.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4573g00001 - - gmx:100799054 435.261