Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4568g00011 ATGGCTTCTGGTAATTCAAGATTTGTAAGATTTCAAGATGATCCTGAACTAGCAAAAATCCCAACAACTAACGGTGACATTGGAGTCAAGTTTAAATACAACTTTGATGGAACACTAGTAGCTGAGCCTAGTGCCAAAAAGGGTCAGAAGGAGGAGACAAGGAAGACAGGAAAGTTCATGAAAGCTAGAGTATTATCAAGAGTATTCTCAGAGGACTACGATAGAGTAAGAAGAAGAATATTAGATCCCCGGGGTCAAACCATTCATCGCTGGAACAAGATTTTCTTGGTAGCATGTTTAGTTTCTTTGTTTGTGGACCCTCTCTTCTTTTATTTGCCACTAGTTCGAGATGAAGTATGCATTGATATTGGAACAGCACCTGAAGTTATCCTCACAATTATAAGATCAATGGCAGATGTCTTTTACATGATTCAGATTCTCATGAGGTTTCGTACAGCTTATGTTGCTCCTTCTTCCCGGGTATTTGGGAGAGGAGAACTTGTTATAGACACTTCTAAGATAGCAAATAGGTACCTCTGCAAGGGTTTCTGGTTAGACTTTATTGCTGCCTTGCCCCTTCCTCAGATGTTAATTTGGATTGTCATCCCCAATCTTGGAGGTTCAACCATGGCTAACACAAAAAATGTCCTTCGCTTTATCATCATTTTCCAATATTTGCCGAGGCTATTTCTGATTTTCCCACTTTCATCCCAAATAGTAAAAGCTACAGGGGTTGTGACAGAAACAGCATGGGCAGGGGCTGCTTACAACTTGGTGCTTTACATGCTGGCTAGCCATATTTTAGGAGCTTGCTGGTACCTTCTATCAATTGAACGACAAGAAGCATGTTGGAGGAGTGTCTGTGATCTGGAGGAGTCATCTTGTCAATATAGATTCTTTGACTGCAACATGGTTAAAGATGCCCACAGGGTATCCTGGTTTATAACAAGTAATGTCACAAATTTATGCTCACCAAATGCTAACTTTTATCAGTTTGGTATATACGGTGATGCAGTGACATCCGAAGTTACAATCTCAGCATTCTTTATTAAGTATTTCTTTTGTCTATGGTGGGGCCTAAGGAATCTGAGTTCTTTGGGACAAGGTCTTCTTACTAGCACTTATGTTGGAGAAATAATGTTCGCCATTGTTGTTGCAACCCTTGGATTGGTTCTTTTTGCATTACTGATTGGTAATATGCAGACATACCTACAATCAACTACTGTCCGCTTAGAAGAGTGGAGGGTCAAGAGAACTGATACAGAACAATGGATGCGTCACAGGCAGCTACCTCCAGAACTAAGACAATCTGTGCGTAAATATGATCAATATAAATGGCTTGCTACTCGAGGAGTAGATGAAGAATCTCTTCTCAAAGGACTTCCATTGGATCTTCGGAGAGACATCAAGCGCCACCTTTGTCTTGAACTAGTTAGACGTGTCCCACTGTTTGACCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGTTAAAGCCTGCATTGTGCACAGAAAGCACATGTTTAGTTCGTGAAGGTGATCCTGTGAATGAGATGCTTTTCATAATTAGAGGGCATCTTGATTCTTACACCACCAATGGAGGCCGCAGTGGTTTCTTCAATTCATGCCGTATTGGACCAGGTGATTTCTGTGGTGAGGAACTGTTAACATGGGCCTTGGATCCAAGACCAAGTGTCACACTTCCTTCATCCACTAGAACAGTTAAGGCCATCTCTGAAGTAGAGGCTTTTGCCCTCATAGCTGAAGACCTGAAGTTTGTTGCATCTCAGTTTAGAAGACTACACAGTAAACAACTTAGACACAAGTTCAGGTTTTACTCACACCAATGGAGAACATGGGCTGCATGTTTTATACAATCTGCATGGAGAAGGTATAAGAAACGAAAGGAAGCTGCTGAATTGAAGGCCAGGGAGAATGTCACGGTTGATAAGCCTGAAACACCAACATATACATCAGGCTTAGTTGTGTATGCAACAAGGATGAAGAGGAGCACTAGGAAGGGTGTGAATATGAATTCTGGAACAAATTCAAGAGTAGTCAACTCTAATTTGCAGAAGCCAGCAGAACCAGACTTTTCTGTTGATGAGTAA 2115 0.4132 MASGNSRFVRFQDDPELAKIPTTNGDIGVKFKYNFDGTLVAEPSAKKGQKEETRKTGKFMKARVLSRVFSEDYDRVRRRILDPRGQTIHRWNKIFLVACLVSLFVDPLFFYLPLVRDEVCIDIGTAPEVILTIIRSMADVFYMIQILMRFRTAYVAPSSRVFGRGELVIDTSKIANRYLCKGFWLDFIAALPLPQMLIWIVIPNLGGSTMANTKNVLRFIIIFQYLPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLVLYMLASHILGACWYLLSIERQEACWRSVCDLEESSCQYRFFDCNMVKDAHRVSWFITSNVTNLCSPNANFYQFGIYGDAVTSEVTISAFFIKYFFCLWWGLRNLSSLGQGLLTSTYVGEIMFAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMRHRQLPPELRQSVRKYDQYKWLATRGVDEESLLKGLPLDLRRDIKRHLCLELVRRVPLFDQMDERMLDAICERLKPALCTESTCLVREGDPVNEMLFIIRGHLDSYTTNGGRSGFFNSCRIGPGDFCGEELLTWALDPRPSVTLPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQSAWRRYKKRKEAAELKARENVTVDKPETPTYTSGLVVYATRMKRSTRKGVNMNSGTNSRVVNSNLQKPAEPDFSVDE 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4568g00011 704 Gene3D Jelly Rolls 481 601 IPR014710 -
Gabi4568g00011 704 MobiDBLite consensus disorder prediction 673 704 - -
Gabi4568g00011 704 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
Gabi4568g00011 704 CDD CAP_ED 483 614 IPR000595 -
Gabi4568g00011 704 ProSiteProfiles cAMP/cGMP binding motif profile. 483 566 IPR000595 -
Gabi4568g00011 704 MobiDBLite consensus disorder prediction 673 696 - -
Gabi4568g00011 704 SMART cnmp_10 483 614 IPR000595 -
Gabi4568g00011 704 Pfam Ion transport protein 91 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi4568g00011 704 SUPERFAMILY cAMP-binding domain-like 413 609 IPR018490 -
Gabi4568g00011 704 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 58 700 - -
Gabi4568g00011 704 FunFam Cyclic nucleotide-gated ion channel 1 481 599 - -
Gabi4568g00011 704 Gene3D - 93 407 - -
Gabi4568g00011 704 Gene3D Helix hairpin bin 411 474 - -
Gabi4568g00011 704 PRINTS EAG/ELK/ERG potassium channel family signature 378 389 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4568g00011 704 PRINTS EAG/ELK/ERG potassium channel family signature 396 405 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4568g00011 704 PRINTS EAG/ELK/ERG potassium channel family signature 352 369 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4568g00011 704 PRINTS EAG/ELK/ERG potassium channel family signature 146 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4568g00011 704 PRINTS EAG/ELK/ERG potassium channel family signature 263 273 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4568g00011 704 PRINTS EAG/ELK/ERG potassium channel family signature 446 453 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi4568g00011 704 SUPERFAMILY Voltage-gated potassium channels 82 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4568g00011 Gabi-Chr4568 77978 82412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4568g00011 57 703 Ion Channels AT2G28260 74.847 0.0 1025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4568g00011 K05391 - gmx:100791992 1156.74