Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4568g00006 ATGTCAGCAGGTTCAAAGAAACACATTTCCAGCAAGATTGTTGTAGTTATTCTATTAATATGTGTTATATGCACAACCATTGCGTTGGTTGCCTCCGTTATGTGCTATGTCTACCTAAGGGACAGATACTCTATTCAATCACCAATATTCTCATCTGATAAGGAAACAAGTAGTGGTAGTACAGCCAACTTAATTAGTCATAGGACTGGGACTTCTTCAGTGTCAGATACAAAATTTGCTATAAACTCTCCCATTTGTCACTTTAAAGGATGCTTTCAGAAATCCTCTTTCTTGTTTGGGAGGCAAAAAGAAACTTTTCACGGAAATATTATTCAATTTTCGTTTGCTGAACTGGAAAATGCCACTGAAAACTTTTCTGCTTCCAACCTAATTGGACTAGGCGGGAGTAGTTATGTATACCATGGTCGGCTTAAAGATGGTAGCAATGTGGCGGTTAAGCGTCTTAAAGATCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGATTGAACTATTATCTAGACTTCATCATTGTCATTTGGTGCCTTTGCTTGGATGCTGCTCAGAATTAAGAGGAAAACATGTTCAGAGGTTACTAGTATTCGAGTACATGCCTAATGGAAATTTAAGGGACTGTTTAGATGGAGTTTTAGGAAAAAATATAGATTGGGCTACTCGTGTTATAATTGCAATAGGAGCTGCAAGGGGCTTGGAATATCTCCATGATGCAGCTGCTCCAAGAATTCTTCACAGAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTGAGATCTGATGGCCTCCCCAGCTGTTCAAATTCTCCAGCCAGAATGCAGGGGACATTTGGCTATTTTGCACCGGAGTATGCTATTGTTGGTAGAGCCTCTCTTGAGTCAGATGTCTTCAGTTTTGGGGTGGTTCTTCTTGAGCTTATCAGTGGTCGACAACCCATCCATAAATCTACAGGCAAAGAAGAAAGCCTTGTTATATGGGCTGCTCCTCGCTTACAAGATAGTAGGCGAGTAATAACAGAGTTGGTTGATCCACAATTGAAAGGAAATTTCCCAGAAGAAGAGGTTCATATAATGGCATACTTAGCAAAGGAGTGTTTGCTGCTGGATCCTGACACTCGACCAACCATGAGTGAGGTTGTTCAGATTCTTTCAACTATTTCCCCAGGAAAATCTAAGAGGAGAAGAAACATTCCAGCTAAACTGTTTCAGGAACAAGAGGATGTAGAAAAGCAAAGGCAAGCTCCATCAATTGAAATTCCAACTCATGGTTCATTGCCGCTAGATATTGATCACAATCTGTGTGTTGTGGACAAAAATAAAGAAGCAGATGCAGTTTCAGCTGAGTATATGGAGAATTTGATCCCCTTGACTTCAAAATCTGAGGGCTGGCATGCATCAGAAGAGGAAATGGTAGACCTAACTGAGCCTCGTTTTGAATCATTTTGCATTACAAATGTCAATTTCCCTTGA 1533 0.4018 MSAGSKKHISSKIVVVILLICVICTTIALVASVMCYVYLRDRYSIQSPIFSSDKETSSGSTANLISHRTGTSSVSDTKFAINSPICHFKGCFQKSSFLFGRQKETFHGNIIQFSFAELENATENFSASNLIGLGGSSYVYHGRLKDGSNVAVKRLKDQGGPEADSAFFKEIELLSRLHHCHLVPLLGCCSELRGKHVQRLLVFEYMPNGNLRDCLDGVLGKNIDWATRVIIAIGAARGLEYLHDAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDGLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSTGKEESLVIWAAPRLQDSRRVITELVDPQLKGNFPEEEVHIMAYLAKECLLLDPDTRPTMSEVVQILSTISPGKSKRRRNIPAKLFQEQEDVEKQRQAPSIEIPTHGSLPLDIDHNLCVVDKNKEADAVSAEYMENLIPLTSKSEGWHASEEEMVDLTEPRFESFCITNVNFP 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4568g00006 510 PANTHER OS01G0750732 PROTEIN 6 412 - -
Gabi4568g00006 510 Gene3D Transferase(Phosphotransferase) domain 1 206 430 - -
Gabi4568g00006 510 CDD STKc_IRAK 131 404 - -
Gabi4568g00006 510 SUPERFAMILY Protein kinase-like (PK-like) 106 404 IPR011009 -
Gabi4568g00006 510 FunFam receptor-like serine/threonine-protein kinase NCRK 99 205 - -
Gabi4568g00006 510 Gene3D Phosphorylase Kinase; domain 1 99 205 - -
Gabi4568g00006 510 Pfam Protein kinase domain 127 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4568g00006 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Gabi4568g00006 510 FunFam receptor-like serine/threonine-protein kinase NCRK 206 416 - -
Gabi4568g00006 510 SMART serkin_6 125 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4568g00006 510 ProSiteProfiles Protein kinase domain profile. 125 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4568g00006 510 ProSitePatterns Protein kinases ATP-binding region signature. 131 153 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4568g00006 Gabi-Chr4568 38883 45641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4568g00006 6 507 Receptor kinase-like Gene Family AT2G28250 55.361 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Gabi4568g00006 Pkinase 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4568g00006 - - gmx:100817870 840.106