Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4568g00003 ATGAAGTCACAGCTCAAAATTGCTCTTGCTTTTGTTATTAGCTTGCTTTGGATTCGGCACTCGTTTTGTGATGAACCTTCTGATACATCTAGCCTAAACAAATGGAAATGCAGATGTTCTTTCCAAGGGAACCAGAGCTACTCTCTCGCTAATTGTTCTAAGTCATGTGATTGCCATTCAGATGCTGAAGAGAGTGCATCCATATGGACATGCGTATGTAATCCCAATGGGTTCCCCCAAGTGGCAGCAGATGGTCATAGCCCTAATTGCTTTAATGCCTGCAACTGCACCTGGGGAACTGTCAGCATGTCAGCAGGTTCAAAGAAACACATTTCCAGCAAGATTGTTGTAGTTATTCTATTAATATGTGTTATATGCACAACCATTGCGTTGGTTGCCTCCGTTATGTGCTATGTCTACCTAAGGGACAGATACTCTATTCAATCACCAATATTCTCATCTGATAAGGAAACAAGTAGTGGTAGTACAGCCAACTTAATTAGTCATAGGACTGGGACTTCTTCAGTGTCAGATACAAAATTTGCTATAAACTCTCCCATTTGTCACTTTAAAGGATGCTTTCAGAAATCCTCTTTCTTGTTTGGGAGGCAAAAAGAAACTTTTCACGGAAATATTATTCAATTTTCGTTTGCTGAACTGGAAAATGCCACTGAAAACTTTTCTGCTTCCAACCTAATTGGACTAGGCGGGAGTAGTTATGTATACCATGGTCGGCTTAAAGATGGTAGCAATGTGGCGGTTAAGCGTCTTAAAGATCAAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAGGAGATTGAACTATTATCTAGACTTCATCATTGTCATTTGGTGCCTTTGCTTGGATGCTGCTCAGAATTAAGAGGAAAACATGTTCAGAGGTTACTAGTATTCGAGTACATGCCTAATGGAAATTTAAGGGACTGTTTAGATGGAGTTTTAGGAAAAAATATAGATTGGGCTACTCGTGTTATAATTGCAATAGGAGCTGCAAGGGGCTTGGAATATCTCCATGATGCAGCTGCTCCAAGAATTCTTCACAGAGATGTCAAATCAACTAACATTCTTCTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGTATGGCTAAAAACTTGAGATCTGATGGCCTCCCCAGCTGTTCAAATTCTCCAGCCAGAATGCAGGGGACATTTGGCTATTTTGCACCGGAGTATGCTATTGTTGGTAGAGCCTCTCTTGAGTCAGATGTCTTCAGTTTTGGGGTGGTTCTTCTTGAGCTTATCAGTGGTCGACAACCCATCCATAAATCTACAGGCAAAGAAGAAAGCCTTGTTATATGGGCTGCTCCTCGCTTACAAGATAGTAGGCGAGTAATAACAGAGTTGGTTGATCCACAATTGAAAGGAAATTTCCCAGAAGAAGAGGTTCATATAATGGCATACTTAGCAAAGGAGTGTTTGCTGCTGGATCCTGACACTCGACCAACCATGAGTGAGGTTGTTCAGATTCTTTCAACTATTTCCCCAGGAAAATCTAAGAGGAGAAGAAACATTCCAGCTAAACTGTTTCAGGAACAAGAGGATGTAGAAAAGCAAAGGCAAGCTCCATCAATTGAAATTCCAACTCATGGTTCATTGCCGCTAGATATTGATCACAATCTGTGTGTTGTGGACAAAAATAAAGAAGCAGATGCAGTTTCAGCTGAGTATATGGAGAATTTGATCCCCTTGACTTCAAAATCTGAGGGCTGGCATGCATCAGAAGAGGAAATGGTAGACCTAACTGAGCCTCGTTTTGAATCATTTTGCATTACAAATGTCAATTTCCCTTGA 1839 0.4089 MKSQLKIALAFVISLLWIRHSFCDEPSDTSSLNKWKCRCSFQGNQSYSLANCSKSCDCHSDAEESASIWTCVCNPNGFPQVAADGHSPNCFNACNCTWGTVSMSAGSKKHISSKIVVVILLICVICTTIALVASVMCYVYLRDRYSIQSPIFSSDKETSSGSTANLISHRTGTSSVSDTKFAINSPICHFKGCFQKSSFLFGRQKETFHGNIIQFSFAELENATENFSASNLIGLGGSSYVYHGRLKDGSNVAVKRLKDQGGPEADSAFFKEIELLSRLHHCHLVPLLGCCSELRGKHVQRLLVFEYMPNGNLRDCLDGVLGKNIDWATRVIIAIGAARGLEYLHDAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRSDGLPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLELISGRQPIHKSTGKEESLVIWAAPRLQDSRRVITELVDPQLKGNFPEEEVHIMAYLAKECLLLDPDTRPTMSEVVQILSTISPGKSKRRRNIPAKLFQEQEDVEKQRQAPSIEIPTHGSLPLDIDHNLCVVDKNKEADAVSAEYMENLIPLTSKSEGWHASEEEMVDLTEPRFESFCITNVNFP 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4568g00003 612 CDD STKc_IRAK 233 506 - -
Gabi4568g00003 612 Pfam Protein kinase domain 229 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4568g00003 612 SUPERFAMILY Protein kinase-like (PK-like) 208 506 IPR011009 -
Gabi4568g00003 612 SMART serkin_6 227 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4568g00003 612 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Gabi4568g00003 612 FunFam receptor-like serine/threonine-protein kinase NCRK 201 307 - -
Gabi4568g00003 612 FunFam receptor-like serine/threonine-protein kinase NCRK 308 518 - -
Gabi4568g00003 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672|GO:0006468
Gabi4568g00003 612 Gene3D Transferase(Phosphotransferase) domain 1 308 532 - -
Gabi4568g00003 612 ProSiteProfiles Protein kinase domain profile. 227 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4568g00003 612 Gene3D Phosphorylase Kinase; domain 1 201 307 - -
Gabi4568g00003 612 PANTHER OS01G0750732 PROTEIN 30 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4568g00003 Gabi-Chr4568 38883 45642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4568g00003 1 609 Receptor kinase-like Gene Family AT2G28250 51.870 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Gabi4568g00003 Pkinase 6.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4568g00003 - - gmx:100817870 1033.48