Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4564g00002 ATGGAAAGAATGTTCCCTCCCAAGAAGCCCTCAAGTATGAATTCACATGATAGACCCATGTGTGTTCAAGGTGACTCAGGTCTTGTTCTCACCACAGACCCAAAACCTCGTCTCCGTTGGACTGTTGAACTCCATGAACGCTTTGTTGATGCTGTTACTCAGCTTGGAGGGCCTGATAAGGCCACTCCTAAAACCATCATGAGGGTTATGGGTGTAAAGGGTCTCACCCTTTACCACCTGAAGAGCCACCTTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCATTCAATTAAGGATGGTATGAGAGAACTGCAAAGAAGTACTGCTTCGTCTTCTGCCATCATGGGTCGCAACATGAATGAGATGCAAATAGAGGTGCAAAGAAGACTGCATGAACAACTTGAGGTTCAAAAACACCTTCAGTTAAGGATTGAGGCTCAAGGGAAATACATGCAAAGCATATTGGAGAAAGCTTATCAAACACTTGCAGGTGAAAACATGACATCTTCTGCCACTAACTTAAAGGGTATTGTACCTCATCAAGGGATCCATGAAATTGGAGTCATGAAAGAATTTGGCTCCCCTCTTAACTTTTCTTCTTTTCAAGATCTTGACATTTATGGAGGTGGTGACCAACTTGACCTTCAGCACAACATGGAGAAACCAACCCTTGAGGGGTTTATGCCAATTAATGAGAATTTGTGTCTTGGGAAGAAGAGGCCTAACCCTTATAGTGGTAGTGGAAAGAGCCCTTTGATATGGAGTGATGATCTTCGCCTTCAAGATTTGGGGACACCCTCATCATGCCTTGGTCCTCAAGATGATCCTTTCAAAGGTGACCAGATTCATATTGCACCAACATCAATGGATAGAGGCAGTGACATTGATTCCATGTCAGAGATCTATGACACAAAGCCCTTACTCCAAGGGGAAGTTTTAGGTGAAAAGAAATTTGATGCATCTATGAAGCTTGAAAGGCCATCACCAAGAAGAGCACCTCTTCAAGCTGAAAGGATGAGTCCTATGATCAGTACTGGTACCTTGGCACAAGGTAGAAACTCACCATTTGGTTGA 1089 0.4362 MERMFPPKKPSSMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRELQRSTASSSAIMGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMTSSATNLKGIVPHQGIHEIGVMKEFGSPLNFSSFQDLDIYGGGDQLDLQHNMEKPTLEGFMPINENLCLGKKRPNPYSGSGKSPLIWSDDLRLQDLGTPSSCLGPQDDPFKGDQIHIAPTSMDRGSDIDSMSEIYDTKPLLQGEVLGEKKFDASMKLERPSPRRAPLQAERMSPMISTGTLAQGRNSPFG 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4564g00002 362 Gene3D - 34 92 - -
Gabi4564g00002 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Gabi4564g00002 362 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Gabi4564g00002 362 MobiDBLite consensus disorder prediction 345 362 - -
Gabi4564g00002 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 179 IPR044848 GO:0003700
Gabi4564g00002 362 FunFam Myb family transcription factor 34 92 - -
Gabi4564g00002 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Gabi4564g00002 362 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Gabi4564g00002 362 MobiDBLite consensus disorder prediction 329 362 - -
Gabi4564g00002 362 Pfam MYB-CC type transfactor, LHEQLE motif 127 166 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4564g00002 Gabi-Chr4564 76172 78361 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4564g00002 4 362 G2-like Transcription Factor Family AT1G79430 58.355 1.36e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi4564g00002 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4564g00002 - - gmx:100807793 617.846