Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4563g00007 ATGGGAGATAACAATGTCAACCTTCCACCCGGGTTTCGATTTTATCCCACAGATGAAGAGCTTGTAGTCCATTTCCTTCATAGAAAGGCATCACTTTTACCTTGTCATCCAGATGTTATCCCTGATCTTGATCTCTACCCTTATGATCCATGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAAACAATGGTACTACTATAGCAGAAGGACACAAAATAGGGTCACTGGAAATGGTTATTGGATGCCAATGGGGATGGAAGAACCAGTGGTTGCAAGCTCAAGCAACAAGAGAGTTGGTGTGAAGAAATGTTATGTGTTCCATATGGGAGAAGCTGCTGATGGCAACAAAACCAATTGGATAATGCAAGAGTATCGTTTAACAGATTCTGCTTCCTCTAGCAGATCATCCAAAATAAAAGCACAACCAAAAACAGATCATAGTAAATGGGTGATATGTCGAGTTTATGAGCGTGATGAGGAGGGTGATGATGATGATGGTGGTGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAATAAGCTTGCCAAATTAG 582 0.4141 MGDNNVNLPPGFRFYPTDEELVVHFLHRKASLLPCHPDVIPDLDLYPYDPWELHGRALAEGKQWYYYSRRTQNRVTGNGYWMPMGMEEPVVASSSNKRVGVKKCYVFHMGEAADGNKTNWIMQEYRLTDSASSSRSSKIKAQPKTDHSKWVICRVYERDEEGDDDDGGDGTELSCLDEVFLSLDDLDEISLPN 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4563g00007 193 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Gabi4563g00007 193 FunFam NAC domain-containing protein 104 17 161 - -
Gabi4563g00007 193 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Gabi4563g00007 193 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Gabi4563g00007 193 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Gabi4563g00007 193 PANTHER NAC TRANSCRIPTION FACTOR 56 8 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4563g00007 Gabi-Chr4563 72760 73708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4563g00007 6 158 NAC Transcription Factor Family AT1G52890 43.478 2.15e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4563g00007 NAM 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4563g00007 - - gmx:100813096 351.288