Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4563g00003 ATGGAGAACAACAGCAAGATGAAGGTTCCGAAGTCGAGGACTTTGAACGAAAACGTTTCGCCGTTTCAGATCGAGTTGGATGATCATAGAGGACGCTATCTCCAATCAACGAACATGAGTCCAAGATTTCAACCGTACGCAGAGAACATCGACGCCGGCTCGCCGCTCGCGCGGTACCTCTTCAGCGCGTCTCCAATTTCCCGGAAGGTTATGATCGGCGACGAGGCCTTCACTTCGCCGACGTTCGGCTCCAGCAAGTACGGCTCCAGCAGGCATTCACTTCTCCGTCGTTCGCGGTCGCCGCTTTCTGCTATTGAGAACGCGCCGCGCTTGTCGCCGCCGATGTACGGAACGCCGGTGAAGGTGGATGATGAAGTTCTTGTGATGGATGATATTCTGGTGAGGCGAATGTCGGGAGAAAAGAACGGAAGGTCTTCATCATCTTCCTCCGGCCGGGGTTCGTCGTCGTCGTCGAAGAGCGTGTTCAAGACGGATATTTGCAGAGCGTGGGAGGAATCTGGAAACTGCCGCTACAACTCCAAATGCCAGATTGCACACGGGAAAGAGCTTCATCCTAGTCGTCTCTCCATGATGAGCAAATATGAGGCACAGACGTCCAAATCACCTTTGAGTGCAGGATCACGCATACATGGCCCAAGTAGCCAGAGTTGTGGTAAGTCCTATGCAGCAGCTGTATCTGGAAAAGAAGTCACAACATCCGAACAAGCTTCACATGAACCTCATCATTCCCTTGTCAATTCCAACACTTTCAATGACTGGTCACCCTTGGATGATGGCATTGATGTTGTCCTCCCAAATGTTTCTGATAAAGCTCCGTCAAGGGAAGAAGTTGATACACACATTTTCAGGATTCTCTATGCACCCTCTACTAAAAGGAGGCTACCGGTATTTGAAGAAATTTGCCAATGTGAAGAGAACCCGTGA 945 0.5058 MENNSKMKVPKSRTLNENVSPFQIELDDHRGRYLQSTNMSPRFQPYAENIDAGSPLARYLFSASPISRKVMIGDEAFTSPTFGSSKYGSSRHSLLRRSRSPLSAIENAPRLSPPMYGTPVKVDDEVLVMDDILVRRMSGEKNGRSSSSSSGRGSSSSSKSVFKTDICRAWEESGNCRYNSKCQIAHGKELHPSRLSMMSKYEAQTSKSPLSAGSRIHGPSSQSCGKSYAAAVSGKEVTTSEQASHEPHHSLVNSNTFNDWSPLDDGIDVVLPNVSDKAPSREEVDTHIFRILYAPSTKRRLPVFEEICQCEENP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4563g00003 314 MobiDBLite consensus disorder prediction 1 21 - -
Gabi4563g00003 314 MobiDBLite consensus disorder prediction 137 159 - -
Gabi4563g00003 314 MobiDBLite consensus disorder prediction 140 159 - -
Gabi4563g00003 314 SUPERFAMILY CCCH zinc finger 161 188 IPR036855 GO:0046872
Gabi4563g00003 314 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Gabi4563g00003 314 Gene3D - 153 192 - -
Gabi4563g00003 314 ProSiteProfiles Zinc finger C3H1-type profile. 162 189 IPR000571 GO:0046872
Gabi4563g00003 314 PANTHER CCCH ZINC FINGER/TIS11-RELATED 64 213 IPR045877 GO:0003729
Gabi4563g00003 314 FunFam zinc finger CCCH domain-containing protein 15-like 155 193 - -
Gabi4563g00003 314 MobiDBLite consensus disorder prediction 205 225 - -
Gabi4563g00003 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 162 188 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4563g00003 Gabi-Chr4563 16054 24376 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4563g00003 zf-CCCH 6.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4563g00003 - K18753 gmx:102665928 288.885