Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4561g00003 ATGGCTTCAAAGGCACAGTTCCATGTATTGGCTGTTGATGACAGTCCTATTGATAGAATGGTGATTGTGAGGCTCCTAAAAACCTCTTCCATTCATGTTACTGCAGTGGACTCTGCCATTGAGGCTTTAAAATTTCTAGGTTTGGGGAGGACTCTTGACTCTTCTGTTGCTTCAGACATTCATCAGGGTGTTGATGTAAACCTGATCATAACAGATTACAGTATGCCACAAATGACGGGCTATGATCTGATGAGAAAAATCAAGGAATTTAAAAAAGACATACCAATTGTGATTATGTCCTCAGAGGATATTCCATCAAGGATTAAAAGTTGCTTGGAAGAGGGAGCTGAAGAATTCTTTCTGAAACCAGTTCAACAGTCACATGTAAATAAGCTCAAGTCTTATTTGTCGAAATCAAGACTCAAGGATGAACAAGACCAACTCATCGACAACAGTTAG 459 0.3943 MASKAQFHVLAVDDSPIDRMVIVRLLKTSSIHVTAVDSAIEALKFLGLGRTLDSSVASDIHQGVDVNLIITDYSMPQMTGYDLMRKIKEFKKDIPIVIMSSEDIPSRIKSCLEEGAEEFFLKPVQQSHVNKLKSYLSKSRLKDEQDQLIDNS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4561g00003 152 Gene3D - 8 151 - -
Gabi4561g00003 152 Pfam Response regulator receiver domain 9 129 IPR001789 GO:0000160
Gabi4561g00003 152 SMART REC_2 7 136 IPR001789 GO:0000160
Gabi4561g00003 152 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 138 IPR045279 GO:0009736
Gabi4561g00003 152 ProSiteProfiles Response regulatory domain profile. 8 137 IPR001789 GO:0000160
Gabi4561g00003 152 SUPERFAMILY CheY-like 7 144 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4561g00003 Gabi-Chr4561 42254 44262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4561g00003 1 152 Response Regulator Gene Family AT3G57040 56.875 2.19e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4561g00003 Response_reg 5.4e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4561g00003 K14492 - gmx:100787436 204.527