Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4560g00005 ATGGTGGTGAAAGTTAAGAGAGATACGCTACGAGCATGCATGACATGCCCTCTTTGCCATAAGCTCTTCAAAGATGCTACCACCATCTCTCTCTGCCTTCATACATTTTGCAGGAAGTGCATATATGACAAACTCTCGGATGAGGAAATGGATTGCTGTCCAGTGTGCAATATTGATCTAGGTTGCCTTCCAGTGGAAAAACTCAGGCCAGACCATAATATGCAAGATCTAAGGGAAAAAGTATTCCCTTTTAAAAGAAGTAAAATCAAGGCCCCAGAAGTTTTGTCTTCAATATCCTTACCTGCAAAAAGGAAGGAAAGATCACTTTCGTCATTGGTGGTTAGTGCTCCAAAAGTTCCAATGCAAACTGGCTTTACAGGAAAGAGAACAAAAATGAGTACTAGAAAGGCTTCTGCTTTACGTGGATGCAGTTTTATTCTTGAAGAATCAATAAAGAAGGAAGAAACGAATGGTGAAGATAATCATAATACAGATTCTCCCATGGTTGAGCCTTCTAAGAAGCATAAGCCCAATGAAGATACAGAGAACAGTGTGGAACTTACAGAAGGGAAGGTTGATCTCTGGACACCATTGAACTGTCTTGTGGAAGCTGCCAACAGAACAAAGTCCTCCAGGTCAAATTCACAAGCAATTCCTCTTGTCAAATTAGAGTCTCCAACTACTGCTCATGGTGGACTAGATACACTTGAAGTTACAACGAAAACAGAGCTACCTGCTTCTGTCCAGAGAACCAAAAATAAGGATAATGGACATAAAACAATATTTGGAGATGACAAGGATGCTAACAGCTTGCCTTCAGGACCAGCGAAGCGAAGAAGGTTGCGTCCTGCTGGTCAGAAAAGAGTTGCAGCATCTGAGATGTCTGCCTCAGCCCCAGTCATGCTAGATGCCACTGGGGGCAAGTGCAACAGAAAAAACAATCCTATATGGTTTTCATTAGTTGCTTCAGAGGACCAGAAAGGAGATGTTCCCTTGCCACAGATCTCAGCCTGTTACTTAAGAATAAAGGATGGTACTGTGCCTGTCTCATTTATTCAAAAGTACCTTGTGAAGAAACTTGATCTTGCCAGCGAGGCAGAGGTGGAAATAATGTGCCGGGGTCAGCCAGTGCTCCCATCTCTGCAGCTGCATAACTTGGTAGATCTGTGGTTCCGGACAGCATCAACCTCAAAAAAGATACCAGCATCTTTGGGGTCCTCAGCTAAGGATTTTGTGATGGTTTTATCATATTGTCGAAAGGCCTCGTCTCCTTGA 1275 0.4306 MVVKVKRDTLRACMTCPLCHKLFKDATTISLCLHTFCRKCIYDKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNMQDLREKVFPFKRSKIKAPEVLSSISLPAKRKERSLSSLVVSAPKVPMQTGFTGKRTKMSTRKASALRGCSFILEESIKKEETNGEDNHNTDSPMVEPSKKHKPNEDTENSVELTEGKVDLWTPLNCLVEAANRTKSSRSNSQAIPLVKLESPTTAHGGLDTLEVTTKTELPASVQRTKNKDNGHKTIFGDDKDANSLPSGPAKRRRLRPAGQKRVAASEMSASAPVMLDATGGKCNRKNNPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIQKYLVKKLDLASEAEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKIPASLGSSAKDFVMVLSYCRKASSP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4560g00005 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 108 IPR013083 -
Gabi4560g00005 424 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Gabi4560g00005 424 Gene3D - 300 401 - -
Gabi4560g00005 424 MobiDBLite consensus disorder prediction 244 292 - -
Gabi4560g00005 424 CDD RING-HC_PCGF 14 57 - -
Gabi4560g00005 424 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Gabi4560g00005 424 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Gabi4560g00005 424 MobiDBLite consensus disorder prediction 151 186 - -
Gabi4560g00005 424 SMART ring_2 16 56 IPR001841 -
Gabi4560g00005 424 SUPERFAMILY RING/U-box 10 82 - -
Gabi4560g00005 424 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 421 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4560g00005 Gabi-Chr4560 48032 53214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4560g00005 1 343 C3H Transcription Factor Family AT2G30580 44.972 2.05e-86 265