Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4560g00002 ATGGATGCAGAGGGAGACAAATACAATATGATAAATTTTGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGCGAGTCACAACTCAAGAGCAGTGGTGGAAAGAGAGGTTTCTCAGAGACAGATACTGTGGATTTGAAGCTTAATCTTTCTTCCAATAACGACTTGGGTTCTGCCTCAGTTTCACCCTCATCTGTGGCTGCAGACAAGGTTAAAGAGAAAACTTCTGCTGCTACTACTACTGCAGATCCTCCTCCTCGCTCTAATGACCCAGCAAAACCACCTGCGAAGGCACAAGTTGTGGGTTGGCCACCAGTTCGATCCTTCAGAAAGAACATAGTGAATGTTCAAAGGAACAGCAACGATGAAGCAAAGAAGACTAGCACTGTCACTGTCGCCGCCACCACCAGCAACGGCGCCAACAGTGGAGGAGCATTCGTGAAGGTGAGCATGGATGGTGCACCATATCTACGCAAGGTGGACCTGAAGTTGTACAAAAGCTATAAAGAGCTGTCAGATGCGCTGGCTAAAATGTTCAGCTCATTCACCGTTGGCAAATGTGGGTCCCAAGGCATGAAGGACTTTATGAATGAGAGCAAATTGATAGACCTTTTGAATGGCTCTGATTATGTACCCACATATGAAGACAAAGACGGAGACTGGATGCTCGTGGGTGACGTGCCTTGGGAAATGTTCGTTGAATCATGCAAGCGCCTACGCATAATGAAAGGTTCTGAGGCAATCGGGCTAGCGCCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 786 0.4784 MDAEGDKYNMINFEETELRLGLPGESQLKSSGGKRGFSETDTVDLKLNLSSNNDLGSASVSPSSVAADKVKEKTSAATTTADPPPRSNDPAKPPAKAQVVGWPPVRSFRKNIVNVQRNSNDEAKKTSTVTVAATTSNGANSGGAFVKVSMDGAPYLRKVDLKLYKSYKELSDALAKMFSSFTVGKCGSQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKNRS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4560g00002 261 SUPERFAMILY CAD & PB1 domains 139 242 - -
Gabi4560g00002 261 ProSiteProfiles PB1 domain profile. 143 243 IPR000270 GO:0005515
Gabi4560g00002 261 Gene3D - 137 255 - -
Gabi4560g00002 261 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 248 IPR003311 GO:0005634|GO:0006355
Gabi4560g00002 261 Pfam AUX/IAA family 15 252 IPR033389 -
Gabi4560g00002 261 MobiDBLite consensus disorder prediction 48 64 - -
Gabi4560g00002 261 MobiDBLite consensus disorder prediction 20 39 - -
Gabi4560g00002 261 MobiDBLite consensus disorder prediction 48 100 - -
Gabi4560g00002 261 FunFam Auxin-responsive protein 138 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4560g00002 Gabi-Chr4560 21837 25027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4560g00002 147 246 B3 DNA Binding Superfamily AT3G61830 35.000 1.12e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi4560g00002 AUX_IAA 8e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4560g00002 K14484 - qsu:112037338 351.288