Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4559g00007 ATGGGTTGCATATGTTCTAAGAGTTCAGCTGTAGAAGACAGCAAGGAAGTTATCACAGAGAATTTGCATTCATCTAGCACAAGGCCCACAAGGCCCTCAGAGTTGAATGTTTTGCGATTGAATTCCAGCAAGAGGGTTGAAGGGGTTAAGTTGAAAGATACGTTATTCGATGGTGGCAAGGTTAAAGCTTCATTCATTGACAAGAAAGCCAATGGTTCAGTGCTGTTGCGTGATGATCAAAACGGGAAGAAGAAAATGGAGAAGCCTGAATTGACTGTTATTGATCATCCTGGCCTTGGAAGGGTTCCAAAGGCTACAGAAGGAGAACAAGTTGCAGCAGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCACGGAGTGCAAATACTTTTGAGAGGTTACATAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCACGTGATGTGACTCACCAAAAGTTTGTTGCGTTGAAGAGGGTACGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTTTGCGTAGGCTTGACCATCCAAACATAATAAAGTTAGATGGCTTGATAACATCACAGACTTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGTATCCAATCCTGACATTAAGTTCTCTGAACCACAGCTGAAATGCTACATACAGCAACTTCTTAGTGGATTGGATCATTGCCATAGTCATGGTGTTCTCCATCGTGACATAAAGGGGTCAAATCTTCTCATTGACAATAATGGTGTCTTAAAGATTGCTGATTTTGGTTTGGCAAGTTTTTTTGATCCCCATCACAGTGTTCCATTGACAAGCCGTGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTCGGAGCAAATCATTATGGGGTTGCAGTAGATTTATGGAGCACTGGTTGCATAATGGGGGAACTATATACTGGCAGGCCCATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGAATTTTTAAACTTTGTGGCTCACCATCTGAGGACTATTGGCTAAAATTGAGGTTGCCACATTCAACTGTATTCAAGCCTCCACACAATTATAGGCGATGTGTTGCAGAGACATTTAAGGAATACCCATCTGCTGTGAAGCTTATAGAGACTCTGCTTTCTGTGGAGCCAGCACATCGAGGGACAGCAGCTGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAACCTCTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCCAGCAAGGAGATTGATGCTAAATTGCGGGATGAAGCAACCAGAAGGCAAGGAGCTGTTGGAGGTAGGGAGCAAAAAGTTGCCTCGGGAGTTAGACAAGAAAAAGGACCTAGGGCCCATGTCACAGCAAAAGGCAATGCCGACCCAGGCGCATCAATACAGCAAGAGAAACGTTACTCCAGCTCAAAGAACCTAGGTGAATTGTCCAGTCGTCATAGGGAACCTGGGTCTGGTTTTCTGGCTTTCCCACACAAACAGTCAGCAGATATTAAAGAAATGGAAAATAATTTATCAGGGCATGTTTATAAAAGGCCTTCACATTCAGGTCCACTCGTTCCTGGTTTTGGCTGGGCAAAGAGTGGGAAGGAAGTGGATGATGGGCCTTCTGTTTCAAACAGAGCGAACCTATCAAAGCTATCTGGGCTAGTGGCATCTAGGACTTTAGATCAGGAGGAAAAACAAGTTCACTTGCACCTCAGAAAACCAATTGAAGTAAGAAAATCCATTGAGTCAACTAATGTATCAGAGTCAAGAAGAAGGCACGATCAAAAACGGATCGTTGATCTCGGTCAACATGAAAATAGAAGGGTCCCTACAGAAAAATCAACTCCGGAAGGGCGTGGGTCCAAGGGAAACATGATATATCTCTCAGGTCCATTATCCTCAAGCAATATGGATCAGATGCTCAAAGAGCATGATCGGAAGATCCAGGAGTTTTCAAGACGAGCAAGAATTGACAAGTCAAAAGCAAGAGGTGATAAAGCTCGTGCACAGCGAAAGTAG 2094 0.4351 MGCICSKSSAVEDSKEVITENLHSSSTRPTRPSELNVLRLNSSKRVEGVKLKDTLFDGGKVKASFIDKKANGSVLLRDDQNGKKKMEKPELTVIDHPGLGRVPKATEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVTHQKFVALKRVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLDGLITSQTSRSLYLVFEYMEHDLTGLVSNPDIKFSEPQLKCYIQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCIMGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHNYRRCVAETFKEYPSAVKLIETLLSVEPAHRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKLRDEATRRQGAVGGREQKVASGVRQEKGPRAHVTAKGNADPGASIQQEKRYSSSKNLGELSSRHREPGSGFLAFPHKQSADIKEMENNLSGHVYKRPSHSGPLVPGFGWAKSGKEVDDGPSVSNRANLSKLSGLVASRTLDQEEKQVHLHLRKPIEVRKSIESTNVSESRRRHDQKRIVDLGQHENRRVPTEKSTPEGRGSKGNMIYLSGPLSSSNMDQMLKEHDRKIQEFSRRARIDKSKARGDKARAQRK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4559g00007 697 FunFam probable serine/threonine-protein kinase At1g54610 221 461 - -
Gabi4559g00007 697 ProSiteProfiles Protein kinase domain profile. 138 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4559g00007 697 SMART serkin_6 138 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4559g00007 697 PANTHER CELL DIVISION PROTEIN KINASE 136 427 - -
Gabi4559g00007 697 MobiDBLite consensus disorder prediction 452 518 - -
Gabi4559g00007 697 MobiDBLite consensus disorder prediction 607 697 - -
Gabi4559g00007 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Gabi4559g00007 697 Gene3D Phosphorylase Kinase; domain 1 125 220 - -
Gabi4559g00007 697 SUPERFAMILY Protein kinase-like (PK-like) 131 429 IPR011009 -
Gabi4559g00007 697 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Gabi4559g00007 697 MobiDBLite consensus disorder prediction 664 690 - -
Gabi4559g00007 697 Pfam Protein kinase domain 138 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4559g00007 697 CDD STKc_CDK9_like 138 421 - -
Gabi4559g00007 697 MobiDBLite consensus disorder prediction 607 640 - -
Gabi4559g00007 697 FunFam probable serine/threonine-protein kinase At1g54610 125 220 - -
Gabi4559g00007 697 Gene3D Transferase(Phosphotransferase) domain 1 221 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4559g00007 Gabi-Chr4559 60308 66966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4559g00007 130 464 Core Cell Cycle Gene Families AT5G10270 48.011 1.48e-107 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi4559g00007 Pkinase 2.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4559g00007 - - gmx:100807590 1128.62