Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4559g00006 ATGGGTTGCATATGTTCTAAGAGTTCAGCTGTAGAAGACAGCAAGGAAGTTATCACAGAGAATTTGCATTCATCTAGCACAAGGCCCACAAGGCCCTCAGAGTTGAATGTTTTGCGATTGAATTCCAGCAAGAGGGTTGAAGGGGTTAAGTTGAAAGATACGTTATTCGATGGTGGCAAGGTTAAAGCTTCATTCATTGACAAGAAAGCCAATGGTTCAGTGCTGTTGCGTGATGATCAAAACGGGAAGAAGAAAATGGAGAAGCCTGAATTGACTGTTATTGATCATCCTGGCCTTGGAAGGGTTCCAAAGGCTACAGAAGGAGAACAAGTTGCAGCAGGATGGCCGGCATGGCTTTCTTCTGTTGCTGGTGAAGCTATTAAGGGATGGATACCACGGAGTGCAAATACTTTTGAGAGGTTACATAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCACGTGATGTGACTCACCAAAAGTTTGTTGCGTTGAAGAGGGTACGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTTTTGCGTAGGCTTGACCATCCAAACATAATAAAGTTAGATGGCTTGATAACATCACAGACTTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAGCATGATCTTACAGGACTTGTATCCAATCCTGACATTAAGTTCTCTGAACCACAGCTGAAATGCTACATACAGCAACTTCTTAGTGGATTGGATCATTGCCATAGTCATGGTGTTCTCCATCGTGACATAAAGGGGTCAAATCTTCTCATTGACAATAATGGTGTCTTAAAGATTGCTGATTTTGGTTTGGCAAGTTTTTTTGATCCCCATCACAGTGTTCCATTGACAAGCCGTGTAGTAACTCTGTGGTATAGACCACCAGAACTTTTACTCGGAGCAAATCATTATGGGGTTGCAGTAGATTTATGGAGCACTGGTTGCATAATGGGGGAACTATATACTGGCAGGCCCATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGAATTTTTAAACTTTGTGGCTCACCATCTGAGGACTATTGGCTAAAATTGAGGTTGCCACATTCAACTGTATTCAAGCCTCCACACAATTATAGGCGATGTGTTGCAGAGACATTTAAGGAATACCCATCTGCTGTGAAGCTTATAGAGACTCTGCTTTCTGTGGAGCCAGCACATCGAGGGACAGCAGCTGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAACCTCTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCCAGCAAGGAGATTGATGCTAAATTGCGGGATGAAGCAACCAGAAGGCAAGGAGCTGTTGGAGGTAGGGAGCAAAAAGTTGCCTCGGGAGTTAGACAAGAAAAAGGACCTAGGGCCCATGTCACAGCAAAAGGCAATGCCGACCCAGGCGCATCAATACAGCAAGAGAAACGTTACTCCAGCTCAAAGAACCTAGGTGAATTGTCCAGTCGTCATAGGGAACCTGGGTCTGGTTTTCTGGCTTTCCCACACAAACAGTCAGCAGATATTAAAGAAATGGAAAATAATTTATCAGGGCATGTTTATAAAAGGCCTTCACATTCAGGTCCACTCGTTCCTGGTTTTGGCTGGGCAAAGAGTGGGAAGGAAGTGGATGATGGGCCTTCTGTTTCAAACAGAGCGAACCTATCAAAGCTATCTGGGCTAGTGGCATCTAGGACTTTAGATCAGGAGGAAAAACAAGTTCACTTGCACCTCAGAAAACCAATTGAAGTAAGAAAATCCATTGAGTCAACTAATGTATCAGAGTCAAGAAGAAGGCACGATCAAAAACGGATCGTTGATCTCGGTCAACATGAAAATAGAAGGGTCCCTACAGAAAAATCAACTCCGGAGGGGCGTGGGTCACTATTTCAGGAAGGGCGTGGGTCCAAGGGAAACATGATATATCTCTCAGGTCCATTATCCTCAAGCAATATGGATCAGATGCTCAAAGAGCATGATCGGAAGATCCAGGAGTTTTCAAGACGAGCAAGAATTGACAAGTCAAAAGCAAGAGGTGATAAAGCTCGTGCACAGCGAAAGTAG 2118 0.4367 MGCICSKSSAVEDSKEVITENLHSSSTRPTRPSELNVLRLNSSKRVEGVKLKDTLFDGGKVKASFIDKKANGSVLLRDDQNGKKKMEKPELTVIDHPGLGRVPKATEGEQVAAGWPAWLSSVAGEAIKGWIPRSANTFERLHKIGQGTYSTVYKARDVTHQKFVALKRVRFDNLDPESVKFMAREIHVLRRLDHPNIIKLDGLITSQTSRSLYLVFEYMEHDLTGLVSNPDIKFSEPQLKCYIQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCIMGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHNYRRCVAETFKEYPSAVKLIETLLSVEPAHRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKLRDEATRRQGAVGGREQKVASGVRQEKGPRAHVTAKGNADPGASIQQEKRYSSSKNLGELSSRHREPGSGFLAFPHKQSADIKEMENNLSGHVYKRPSHSGPLVPGFGWAKSGKEVDDGPSVSNRANLSKLSGLVASRTLDQEEKQVHLHLRKPIEVRKSIESTNVSESRRRHDQKRIVDLGQHENRRVPTEKSTPEGRGSLFQEGRGSKGNMIYLSGPLSSSNMDQMLKEHDRKIQEFSRRARIDKSKARGDKARAQRK 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4559g00006 705 Pfam Protein kinase domain 138 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4559g00006 705 MobiDBLite consensus disorder prediction 672 698 - -
Gabi4559g00006 705 Gene3D Phosphorylase Kinase; domain 1 125 220 - -
Gabi4559g00006 705 ProSiteProfiles Protein kinase domain profile. 138 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4559g00006 705 FunFam probable serine/threonine-protein kinase At1g54610 221 461 - -
Gabi4559g00006 705 SMART serkin_6 138 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4559g00006 705 Gene3D Transferase(Phosphotransferase) domain 1 221 458 - -
Gabi4559g00006 705 MobiDBLite consensus disorder prediction 452 518 - -
Gabi4559g00006 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Gabi4559g00006 705 SUPERFAMILY Protein kinase-like (PK-like) 131 429 IPR011009 -
Gabi4559g00006 705 MobiDBLite consensus disorder prediction 607 639 - -
Gabi4559g00006 705 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Gabi4559g00006 705 CDD STKc_CDK9_like 138 421 - -
Gabi4559g00006 705 FunFam probable serine/threonine-protein kinase At1g54610 125 220 - -
Gabi4559g00006 705 MobiDBLite consensus disorder prediction 607 705 - -
Gabi4559g00006 705 PANTHER CELL DIVISION PROTEIN KINASE 136 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4559g00006 Gabi-Chr4559 60308 66966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4559g00006 130 464 Core Cell Cycle Gene Families AT5G10270 48.011 2.24e-107 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi4559g00006 Pkinase 2.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4559g00006 - - gmx:100807590 1122.46