Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4551g00001 ATGGAGCAAACCACACTCGAGTCCATTCAGTTCAACGAAGAAATCCAGGGAATAATGGCTCCGGCGCCGGAAACCGCGAGCTCCTTCACCGCGTTGCTTGAGCTCCCGCCGACGCAGGCAGTGGAGCTCCTCCACTCGCCGGAGCGCCGCCACGTCAGCAACCCGAAACCCTATCCGTTGAACGCCTTCGGTTGCGGCGGAGAAGGCAGCAATTTGACCTTCCCTTCCAACACCGAGTTGATCGAACGTGCTGCCAGGTTCTCCGTGTTCGCAGGAGAGAACTCGCCGCCGACGGGAGTGAAGAACGAGCCGCCGGAAACTGATTCGAACAAGAGTTCGACTCAGGGAGGTGGATGTGTCTCTGATTCTGCGGTTGAGGACGTGAATCCGAAGGGCACAAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCGTCGAAGAAGAGCAAGAGCGTTGCGGACGAGAGTTCAGGCGACGCGCAGAAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAACTTTTACAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCACTGGTTCTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATCAAGTGGAGTTTTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCGGCCTCGACAGCATATTGGCTACTGAAGGTGTATCTCTGATGGACAGTAACTTCCCCGCCACAGTTGCACCTGTCCTGTGGCCAGAAATCCCACACAACGGAAACAGACAGCAATATCAGCAACCGTGGCAATTTGATGCATTCCAACAACCACTTTGGGGGAGGGAAGAAGATACCCCTAATTTCATAACTCCAGAAAACTCACTTTTGAGTTATGACTCATCAGCAAATTCAGTATCTCTGCACTCAAATCAGTTGAAGATGGAGCTCTGA 1005 0.5154 MEQTTLESIQFNEEIQGIMAPAPETASSFTALLELPPTQAVELLHSPERRHVSNPKPYPLNAFGCGGEGSNLTFPSNTELIERAARFSVFAGENSPPTGVKNEPPETDSNKSSTQGGGCVSDSAVEDVNPKGTKRKEREKKVKVSSKKSKSVADESSGDAQKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHQVEFLSMKLAAVNPRIDFGLDSILATEGVSLMDSNFPATVAPVLWPEIPHNGNRQQYQQPWQFDAFQQPLWGREEDTPNFITPENSLLSYDSSANSVSLHSNQLKMEL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4551g00001 334 MobiDBLite consensus disorder prediction 91 164 - -
Gabi4551g00001 334 CDD bHLH_AtBPE_like 164 249 - -
Gabi4551g00001 334 FunFam transcription factor bHLH48-like isoform X1 171 243 - -
Gabi4551g00001 334 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 88 314 IPR024097 GO:0006355
Gabi4551g00001 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 243 IPR036638 GO:0046983
Gabi4551g00001 334 SMART finulus 180 230 IPR011598 GO:0046983
Gabi4551g00001 334 MobiDBLite consensus disorder prediction 100 120 - -
Gabi4551g00001 334 Pfam Helix-loop-helix DNA-binding domain 178 225 IPR011598 GO:0046983
Gabi4551g00001 334 Gene3D - 171 243 IPR036638 GO:0046983
Gabi4551g00001 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 224 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4551g00001 Gabi-Chr4551 34580 39873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4551g00001 2 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.398 4.01e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4551g00001 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4551g00001 - - vvo:131637109 483.411