Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4546g00002 ATGGCAGAACCATCCACCGCCGAAACCACCTCCGCCAGCGATGCTCATCCGCCGGCGCCAGCTTCCTCGTCGCTCAACGTCCTCGGATTAACGATCGACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTTCGTCCGGCGACACTCCGTACACGTCAGCTACCACCTTCGAAGAACTGAATCTCTCACCGGAGCTTTTGAACGGACTCTACGTGGAGATGAAGTTCCATAAACCTAGTAAGATCCAAGCCGTAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGGTCGCACACGCGCATAACGGTTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGAAAGTACATGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGTGATGCTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACGATTAATAAGTGGATGGCTTATAAGAAACTTGGGGTGACAAGGTTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTCAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAAGTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTGAATGACATTGTCCAGAATTTTGTTTCGAGGACAGTCAAGCAGGATTATAATACACTTTTTGTGAAGGAACTATCTTTAGATGCCGTAAAGCAATATAAAGTTCATTGTCCTGATGAACTCTCTAAGATTGAAATGAAAAAAGATTACATACTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTTGTCGCTCCTGTTGTCGCTCCCGTCGCCCCAAGTAAGGGAGTCGACAAGGGAAAAAGGAAAGTGGTGAACATTGTTAAAAGGAAGGTCCGGTCTGCAGCGGACATTCCTGCCGAGGAGCTTGCTAGGAGGACTGGCGGCCCGGTTATTAAGGATGTGCAGGAGAATGCCCAGAGTTTGGCGGTCAACCCTTCTGCACCTGAAGTTATTCCTCCTAAACCAACGTATTCTGGAAGGAAGAGGGTTGCTAGCGAGGATTTAAGCTCGCCTAAAGGAGCTAAAACGGTTAGGGTGGAGCCGACTGAGTCTGGTCAATCAGGTGGTAGTCTCTCGTTTGCCATGGAGAGTTTCTCGGACGCCCCTGTTGTCGCTCCCGTCGCCCCAAGTAAGGGAGTCGACAAGGGAACCCGGGAGGCTACTCTTGCTGTTGACAACCGTTGTTCTACCCAGCATGATGACTTGGTACAGAAAGGGCGCAAGATTGAGTCCTTAACGGCCGAGATCAGGCGGTTGGGTAAGGAAATTAGTGACCTGAAGGCAACCAATAAAACTTTATCTGACAGCAACCAAGAACTGAAGGGGGCTAGTGACGTGGTGCAACGCCTGTCGCAGGAGAAGGATGACTTATCAAAGTTATTGGATGAGTCTTCAACCGAGAAAAAGGGGCTCCAGGCGGCGAATAGCCAGTTGACTGCCGAGAAAGCTGCCCTTCAGTCGGAGAAGGATGCGTTATCTGTTGAGTTGACTGGCGTATGTGGTAACTTGCATGCCGCCCAAGAGGATTTTAAAAAAGCTTCTAGGCGAGTACAGGAGCTGGAGCTTGGCTTGCCTTCAGTTTTTTATGATTCTTTTAACAACGCCCTGAATCAGGTTCAATTTCGATATCCTAAGATAGATGCTTCGGGCTTGAGTGCCGATTATGTGGTGGAAGGGAAACGCCTGCTTCATAAACTCTATAATGGCGAGACGACTGTGATAGAGGAAGGGCCTGACTCTGATGAGGAAGAGGATGATGTAGAGGAAGAATCAGCCAAGTTCGGTGACTCACCTTTAGGCGACCACCATGTGCTGAGCGGAGAGCAACCCGTAGATGGCGAACCTACTGACGCCGTAGAGATCCCGTCGTGCGGATCCCATCGTTGGCGATGGTGTTATTGGCAACACTTCCTTTGGAAGGTATTGGTGAGGAAGCTTCATCTAGGAATAACGTTGAAGACACTGCTGGGGAGGACGCCACTGAGGGGGTCTCAATAG 2337 0.4788 MAEPSTAETTSASDAHPPAPASSSLNVLGLTIDENKKPSPKFLDEPEDSNIQAVSSGDTPYTSATTFEELNLSPELLNGLYVEMKFHKPSKIQAVTLPMILNPPNRDLVAHAHNGSGKTTCFLLGMLSRVDPKLQAPQAFCICPTRELAIQNTEVLRKMGKYMGISSECAIPADSSDALPIAKRAPIMAQVVIGTPGTINKWMAYKKLGVTRLKILVFDEADQMLAQDGFKDDSLRIMKGIEKVNSNCQVLLFSATLNDIVQNFVSRTVKQDYNTLFVKELSLDAVKQYKVHCPDELSKIEMKKDYILEIGENLGQTIIFVRTRNSAKMLHKSLVEIGENLGQTIIFVRTRNSAKMLHKSLVVAPVVAPVAPSKGVDKGKRKVVNIVKRKVRSAADIPAEELARRTGGPVIKDVQENAQSLAVNPSAPEVIPPKPTYSGRKRVASEDLSSPKGAKTVRVEPTESGQSGGSLSFAMESFSDAPVVAPVAPSKGVDKGTREATLAVDNRCSTQHDDLVQKGRKIESLTAEIRRLGKEISDLKATNKTLSDSNQELKGASDVVQRLSQEKDDLSKLLDESSTEKKGLQAANSQLTAEKAALQSEKDALSVELTGVCGNLHAAQEDFKKASRRVQELELGLPSVFYDSFNNALNQVQFRYPKIDASGLSADYVVEGKRLLHKLYNGETTVIEEGPDSDEEEDDVEEESAKFGDSPLGDHHVLSGEQPVDGEPTDAVEIPSCGSHRWRWCYWQHFLWKVLVRKLHLGITLKTLLGRTPLRGSQ 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4546g00002 778 Coils Coil 616 636 - -
Gabi4546g00002 778 SMART ultradead3 85 289 IPR014001 -
Gabi4546g00002 778 PANTHER RNA HELICASE 53 337 - -
Gabi4546g00002 778 MobiDBLite consensus disorder prediction 1 59 - -
Gabi4546g00002 778 Pfam DEAD/DEAH box helicase 91 262 IPR011545 GO:0003676|GO:0005524
Gabi4546g00002 778 MobiDBLite consensus disorder prediction 688 730 - -
Gabi4546g00002 778 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 65 94 IPR014014 GO:0003724
Gabi4546g00002 778 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 270 IPR027417 -
Gabi4546g00002 778 Gene3D - 44 279 IPR027417 -
Gabi4546g00002 778 Coils Coil 546 608 - -
Gabi4546g00002 778 CDD DEADc_DDX19_DDX25 72 271 - -
Gabi4546g00002 778 Gene3D - 495 654 - -
Gabi4546g00002 778 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 275 IPR014001 -
Gabi4546g00002 778 MobiDBLite consensus disorder prediction 1 30 - -
Gabi4546g00002 778 Coils Coil 515 542 - -
Gabi4546g00002 778 MobiDBLite consensus disorder prediction 688 704 - -
Gabi4546g00002 778 MobiDBLite consensus disorder prediction 419 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4546g00002 Gabi-Chr4546 41796 48393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4546g00002 58 330 Eukaryotic Initiation Factors Gene Family AT1G72730 32.632 6.13e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4546g00002 K18655 - qsa:O6P43_010208 494.967