Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00077 ATGGCTTCCAGTGTTAAGAGCACCAACTCAACAACCACTCAAATGGAACCTCTCCCACCACATCAACACCGTCATCATCATCATCACCACTTTCATCACCATCAAATACAAGACAACCAAATTTCTTTTGGGATGATGCAATCTTCTTCATCGTCCTCTATCCCAGGAAACTACCTCAGAAACAAAGATTCCGGAGCTTATGATTTAGGTGAATTGGATCAAGCTCTTTTTCTCTATCTCGATGGACAAGCAGACCCTTCAAGCGTTCAAGAACAAAGACATAACTCATCATCATCAGGAATGAGGCCTCCAACTCTCAACATTTTCCCGTCTCAGCCTATGCACGTAGAGCCATCATCATCCAATTCCAAGGCTAGCGTAGAGTTAGTTTCTCCGCAAACAAGTGGATCTAAAAGACCGTCAAAGCCTTCGATGGAGTTGGCCAACCCACAAAACGAAACCTCTGTCCCTGAACCACCCAAAGCTATCAAGCGAGAGACCAATCGCAAGGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACTCTCAGAAGACTTGCTCAGAATAGGGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAGCAGCTAGAGTCAAGTAGGATTAGGCTTAATCAACTGGAACAAGAGCTGCAACGTGCTAGATCTCAGGGCATGTTCTTAGGCGGAGGAGGTGCACTTTTGGGAATGGGAGGAGAGCAAGGACTTCCTGTGGCTATGAATAGTATTAGCCCAGATGCTGCTATATTTGACGTAGAATATGCCAGATGGCTAGAGGAGCATCATCGCCTAGTGTGTGAGCTAAGAGCTGCAGTTCAAGAGCACCTTCCTGAGAATGAGCTTAGACTATTTGTTGATAATTATTTGGCACATTATGACCATGTAATGAACCTCAAGAGCTTAGTGGCCAAAACAGATGTATTCCATCTTGTTTCTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAAGCCATCTGAACTCATTAAGATTATTCTGGGTCAAATTGAGCCTCTGACTGAGCAACAAATACTGGGTATATGTGGATTGCAACAATCTACGCAAGAGGCAGAAGAGGCTCTCTCCCAAGGGCTTGAGGCTCTCAATCAATCTCTATCAAACACTATAACAGCAGACTCTTTGAGCTATCCTCTCAATGTGGCTAACTACATGGGACATATGGCAATGGCCATGAACAAGCTCTCCACTCTTGAAGGTTTCGTGAGACAGGCAGATAATCTGAGGCACCAAACCATTCACCGTCTGCATCAGATCCTAACGATACGTCAAGCAGCAAGGTGTTTTCTAACCATTGCCGAGTATTTCCACCGTCTGCGTGCACTGAGTTCTCTGTGGTTGGCACGCCCTCGCCAAGAATAG 1446 0.4564 MASSVKSTNSTTTQMEPLPPHQHRHHHHHHFHHHQIQDNQISFGMMQSSSSSSIPGNYLRNKDSGAYDLGELDQALFLYLDGQADPSSVQEQRHNSSSSGMRPPTLNIFPSQPMHVEPSSSNSKASVELVSPQTSGSKRPSKPSMELANPQNETSVPEPPKAIKRETNRKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARSQGMFLGGGGALLGMGGEQGLPVAMNSISPDAAIFDVEYARWLEEHHRLVCELRAAVQEHLPENELRLFVDNYLAHYDHVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFKPSELIKIILGQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSNTITADSLSYPLNVANYMGHMAMAMNKLSTLEGFVRQADNLRHQTIHRLHQILTIRQAARCFLTIAEYFHRLRALSSLWLARPRQE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00077 481 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700|GO:0006355
Gabi4543g00077 481 Pfam Seed dormancy control 281 354 IPR025422 GO:0006351|GO:0043565
Gabi4543g00077 481 SMART brlzneu 183 236 IPR004827 GO:0003700|GO:0006355
Gabi4543g00077 481 Gene3D - 186 237 - -
Gabi4543g00077 481 ProSiteProfiles DOG1 domain profile. 263 477 IPR025422 GO:0006351|GO:0043565
Gabi4543g00077 481 Coils Coil 206 233 - -
Gabi4543g00077 481 Pfam bZIP transcription factor 187 221 IPR004827 GO:0003700|GO:0006355
Gabi4543g00077 481 MobiDBLite consensus disorder prediction 86 190 - -
Gabi4543g00077 481 MobiDBLite consensus disorder prediction 1 36 - -
Gabi4543g00077 481 PANTHER TRANSCRIPTION FACTOR TGA9 96 480 - -
Gabi4543g00077 481 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 229 IPR004827 GO:0003700|GO:0006355
Gabi4543g00077 481 MobiDBLite consensus disorder prediction 86 156 - -
Gabi4543g00077 481 FunFam BZIP family transcription factor 186 235 - -
Gabi4543g00077 481 SUPERFAMILY Leucine zipper domain 187 229 IPR046347 GO:0003700|GO:0006355
Gabi4543g00077 481 MobiDBLite consensus disorder prediction 1 18 - -
Gabi4543g00077 481 MobiDBLite consensus disorder prediction 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00077 Gabi-Chr4543 809544 815613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00077 56 481 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 65.766 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi4543g00077 DOG1 3.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00077 K14431 - gmx:100815176 781.941