Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00075 ATGAATATCCAAAGCAATGTCCTATCATATTTGGTTCCCCTGGCTGCAGTTTTTGCATCTTTGTATCTCATAAATCCAAATCCACAGTTTCTTAACAATTTCATAGACTTCAGTCTCACACCCTTGTCGTCGTCGTCGTCATCATCATCATCTGTATACTTGGCACTACCTTTAACTAGCACCTTCCTCAGAAACCATCACCATCGACCACACAAGAAACACGATGATAGCGGGAATGCCAGTTCTATATGTGATGATTTTCCACCAGGCATTCCACCTACAAGTACCAATACCACTTCCTATCTTTGTGTTGATCGAAATGGCTGTTGTAATTTCACAACAGTACAAGCAGCCGTGAATGCAGTTCCAGATTTTAGCGAAAAAAGAACTATAATATGGATTAACAGTGGCATCTACTATGAGAAAGTCATGGTGCCAAGAACCAAACCCAACATTACATTTCAAGGACAAGGCTATACTTCAACTGCAATTGCATGGAATGATACTGCAAAGTCCGCGAATGGCACATTTTATAGTGGCTCTGTACAAGTTTTCGCCTCCAACTTCATTGCTAAGAACATGAGCTTCATGAATTTAGCACCAATTCCAAGTCCTGGGGTTGAAGGAGCACAAGCTGTAGCCATGAGAATATCGGGAGATCAAGCTGAATTCAGGGGTTGTGGATTCTTTGGAGCCCAAGACACCCTTCACGATGATAAGGGTCGTCATTACTTCAAAGATTGCTATATCCAAGGCTCCATTGATTTCATATTCGGCAATGCAAGGTCACTCTATGAGAACTGTCAATTGGTTTCTATAGCTAATCCAGTACCCCCGGGACAAAGGAACATAAATGGTGCTGTTACAGCTCATGGTAGAGTTTCAATGGATGAAAATACAGGATTTGCATTTGTGAACAGTACAATAGGAGGCAACGGCAGAATATGGTTGGGTCGGGCATGGAGGCCATATTCCCGTGTTATTTTTGCCTTCACAACAATGTCAGATATCATTGCCCCTGAAGGTTGGAATGATTTCAACGACCCTGCAAGAGATCAGAGTATCTTCTATGGAGAATATAATTGCTCTGGGCCAGGGGCAAATTTGACCATGAGGGCCTCATATGTACAGAGATTAAACGATACACAAGCATTTCCATTCCTCCACGCAAGTTTTATTGATGGCGAACAATGGTTGGAAACTTACAAATAA 1212 0.42 MNIQSNVLSYLVPLAAVFASLYLINPNPQFLNNFIDFSLTPLSSSSSSSSSVYLALPLTSTFLRNHHHRPHKKHDDSGNASSICDDFPPGIPPTSTNTTSYLCVDRNGCCNFTTVQAAVNAVPDFSEKRTIIWINSGIYYEKVMVPRTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFIAKNMSFMNLAPIPSPGVEGAQAVAMRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPPGQRNINGAVTAHGRVSMDENTGFAFVNSTIGGNGRIWLGRAWRPYSRVIFAFTTMSDIIAPEGWNDFNDPARDQSIFYGEYNCSGPGANLTMRASYVQRLNDTQAFPFLHASFIDGEQWLETYK 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00075 403 FunFam Pectinesterase 96 403 - -
Gabi4543g00075 403 Pfam Pectinesterase 104 395 IPR000070 GO:0030599|GO:0042545
Gabi4543g00075 403 ProSitePatterns Pectinesterase signature 2. 250 259 IPR033131 -
Gabi4543g00075 403 Gene3D - 95 403 IPR012334 -
Gabi4543g00075 403 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 90 400 - -
Gabi4543g00075 403 SUPERFAMILY Pectin lyase-like 100 400 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00075 Gabi-Chr4543 765956 769091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00075 73 400 Carbohydrate Esterase AT1G05310 70.732 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00075 - - gmx:100806629 692.575