Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00069 ATGGGTTCAGAAGCTTACACAAAATCACCACCCAACTCATCTTCTGAGTCCCTCAATGGCTTGAAATTCGGCCACAAAATTTACTTTGAGGATGTGGGTTTGGCTACTCCTGCCAGTGCCACCTCCGTTGCCGGTTCCTCCGGTTCAAAGAAAGGAAGAGGTGGTTCGGTTCAGCCGGCTCAGCCACCTAGGTGTCAAGTTGAAGGATGTAAAATAGATCTGAGTGATGCCAAAGCTTACTATTCTAGACACAAAGTCTGCGCCATGCATTCCAAATCCCCTACCGTCGTTGTCTCTGGTCTCCAACAACGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTCCTGAGTTTGATCAAGGGAAAAGAAGTTGCAGGAGGCGACTAGCTGGCCATAACGAACGTCGGAGAAAGCCCCCGCCCAGCTCCCTCTTAACCTCTCGTTATGCCAGACTTTCTTCATCTATTTTTGATAATAGTGGCAGAGGTGGCAGCTTTCTGATGGAATTTGCTTCATACCCAAAGCTTAGTCTGAGAAATTCACATTCAACTCCTAGATCACTTTCATCTGAGCTAGTTCCTGGAAATCAAACCACAACACATAGCTGGCAGGGCAACTCAGAGACACCATCTGACCTCTTCTTGCAAGGTTCAGTGGTTGGGACAAGCTTCCCTGGTCCCAGACATCCTCCAGGGGAAAATTACACTGGAGTCACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAATAACATGTTAAATTTCAATGGGACACCCATGACGCAACTTGCTGCATCTTCTCATGGTGCAGCCATCCATCAACTTCCGAATACCTCGTGGTGTTTCAAGGACATTGATCCCGGTAACTGCTCACACACGGTTGTGTCTGATCTAGGTCTCGGTCAAATGTCGCCACCTCTCAACAGCCAACTTCCTTGTGAGCTCGATCTGTCCCAGCAGGGAAGGAGGCATTATATGGATCTAGAACAGCCCAGAGCCTATGAATCTCCTCACTGGTCACTTTAA 1071 0.479 MGSEAYTKSPPNSSSESLNGLKFGHKIYFEDVGLATPASATSVAGSSGSKKGRGGSVQPAQPPRCQVEGCKIDLSDAKAYYSRHKVCAMHSKSPTVVVSGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSIFDNSGRGGSFLMEFASYPKLSLRNSHSTPRSLSSELVPGNQTTTHSWQGNSETPSDLFLQGSVVGTSFPGPRHPPGENYTGVTDSSCALSLLSSQTWGSRNTAPSLGLNNMLNFNGTPMTQLAASSHGAAIHQLPNTSWCFKDIDPGNCSHTVVSDLGLGQMSPPLNSQLPCELDLSQQGRRHYMDLEQPRAYESPHWSL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00069 356 Gene3D - 55 126 IPR036893 GO:0003677|GO:0005634
Gabi4543g00069 356 MobiDBLite consensus disorder prediction 39 54 - -
Gabi4543g00069 356 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 325 IPR044817 GO:0003677
Gabi4543g00069 356 FunFam Squamosa promoter-binding-like protein 14 56 126 - -
Gabi4543g00069 356 MobiDBLite consensus disorder prediction 180 208 - -
Gabi4543g00069 356 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Gabi4543g00069 356 MobiDBLite consensus disorder prediction 39 63 - -
Gabi4543g00069 356 SUPERFAMILY SBT domain 63 144 IPR036893 GO:0003677|GO:0005634
Gabi4543g00069 356 Pfam SBP domain 65 138 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00069 Gabi-Chr4543 720695 724703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00069 21 356 SBP-box Gene Family AT2G42200 44.505 1.90e-67 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi4543g00069 SBP 6.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00069 - - gmx:100807165 570.852