Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00066 ATGGAGGATTTGAAAAAGAGGAAGCTAGAAGACGCAGAGGCAGTGGCAGAGGCAGAGGCAGACAACGCTGATTTTGTTTCCAAGGAAGAGATGCGCTTTCTCATTGAACCTCTTGCTAAACCCCAGCTCGTCGATCTTCTCGCGAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTTCATCGAAAGCTTTTTGTTCGTGGCTTGGCTTGGAATACCACTTCAGAAACTTTGCGTGCTGCATTTGAAGAGTATGGAGAAATTGAGGAAGGGGCTGTGATCTATGATAAAACAACAGGAAAATCCCGTGGCTATGGATTTATCACTTACAAAAATATGGAATCAACTCAGCGTGCATTGAAAGCAACTAGCAAGTTAATCGATGGAAGGTTGGCTGTCTGTAATCTTGCTTGTGACGGCCTAAGTGGAACAAGTAGTACTCCTGATCTTTCCCTGAGGAAGCTTTATATTGGAAGCTTATCACCAGAAGTCTCAAGTGAAATGCTGCTTAATTATTTTGCAAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGTTTTGGCTTTGTTACGTACAAGACAGCAGAGGCCGCAAAGAAGGCCATAGATGACCCTGAAAAGACTCTTGGGGGGAGGAATATAATTGTAAAATATGCAGATTCCCACAAGGGTAAAACTGGCCAGCCTCCATTTTCTGCAGGAGTGGTTTCAATGGCAGCCTTACCTATGGCCCCAGGATATGTGCAGCCTGGAAAAGCTCATATTAGTTCTGGCCCTCCTGTTGGATATACTTACCCATATGCTGCATCGCCTTACCCAAGCCCTGCGACTGCACCCTCTCCTTATCCAACACAAGGGCAGGTTCCTTATCCTCCAGTTTCTGCGAAGAAAGACCAACTTGGGCTCCCGCCAACTCAACCTGTGGGAATGAACAACAACTATCCTTATTACTATACCAAGCAATGA 1023 0.4477 MEDLKKRKLEDAEAVAEAEADNADFVSKEEMRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTTSETLRAAFEEYGEIEEGAVIYDKTTGKSRGYGFITYKNMESTQRALKATSKLIDGRLAVCNLACDGLSGTSSTPDLSLRKLYIGSLSPEVSSEMLLNYFARHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIIVKYADSHKGKTGQPPFSAGVVSMAALPMAPGYVQPGKAHISSGPPVGYTYPYAASPYPSPATAPSPYPTQGQVPYPPVSAKKDQLGLPPTQPVGMNNNYPYYYTKQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00066 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Gabi4543g00066 340 FunFam UBP1-associated protein 2C 150 248 - -
Gabi4543g00066 340 SUPERFAMILY RNA-binding domain, RBD 61 149 IPR035979 GO:0003676
Gabi4543g00066 340 Coils Coil 1 21 - -
Gabi4543g00066 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 139 IPR000504 GO:0003723
Gabi4543g00066 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 233 IPR000504 GO:0003723
Gabi4543g00066 340 MobiDBLite consensus disorder prediction 295 327 - -
Gabi4543g00066 340 Gene3D - 3 149 IPR012677 -
Gabi4543g00066 340 SUPERFAMILY RNA-binding domain, RBD 158 253 IPR035979 GO:0003676
Gabi4543g00066 340 PANTHER GEO13361P1-RELATED 55 151 - -
Gabi4543g00066 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 240 IPR000504 GO:0003723
Gabi4543g00066 340 Gene3D - 150 252 IPR012677 -
Gabi4543g00066 340 CDD RRM2_NsCP33_like 164 238 - -
Gabi4543g00066 340 SMART rrm1_1 73 145 IPR000504 GO:0003723
Gabi4543g00066 340 SMART rrm1_1 164 236 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00066 Gabi-Chr4543 702922 708076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00066 155 274 C2H2 Transcription Factor Family AT2G19380 32.283 7.08e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00066 K12741 - gmx:100776344 539.265