Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00063 ATGAACGAGAACAAGAATGATTGTAGAGGACTAATTCAACAAAATCATGGACTAAATGGGGATTTTAATTCTGAATTTGGCAATAGTTTTTGTCAACATTTTGATCTCAGAGAGTCACTTGCCATGGCTGGAGGAGGAGGAGGAGGAGAAGCAGAACAGTTACCAAACATAGGCACTGTAAAATCATCTAGCACCATTATGAGCCGTTTTGAGTCACCAGCTTCTGCTTTCTATGCAGCAGAACATTGCATGGGCTTCGCAGAATATGATAGCCAAGTTGGTAATCAATCTTTAAGCTCTCAATTCTATAAGGTTAATGATGTGGAATTCCCATTGTATCAATCTTCCAGGGAAAAACTTATCTTGGACTCAGCAAACCAACCTGATTCCAACTTTGAATTGTCAAACACTTTGCAAGCCATGGTGAAGTCTCAATTGAATAGTAATCAATGCCGTGGATCCCCTGAAAAATCCAATAAAATTTCTTGTGGGAATTTTCCTGGTACCAAGTTCCTTCCAATTGAACAACAGAAGTTGTTCATTGATGGAGTTGCTTCATTTAGCAGGAGCTCATTATTTCCTAACAAAGGAAATCAGGACCATACAGTTGTTCGTGGCTCTTATAACTTCCCAGTTGCACAGTTGAGCTTCTCATCTCAGCAAGAGAAGTTGCCTCCAACATTTTCAGCAGGAAGTGTGTCAAATACTCTTGGAAACTTTTCTCCTAATGGGACAGTAGTCTCAAGTAAAACACGTATAAGATGGACAAATTATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGGGGTGCTGAGAAGGCAACACCAAAAGCTATATTAAAGATGATGGACTCAGATGGTTTGACCATCTTCCATATCAAAAGTCATTTGCAGAAATATAGAATTGCAAAATTCATGCCAGAGTCAACTCAAGGGAAATCTGACAAAAGAATCCATACAGAGGATGTGCATCATCTTGATGTCAAAACTGGCTTGCAAATTAGAGAGGCACTTCAGCTGCAATTAGATGCTCAAAGGCATCTTCATGAACAGCTTGAGATTCAGAGAAAATTACAGTTGCGAATTGAAGAACAAGGTAGGCAGCTGCAAAAATTGTTTGATCAACAACAGAAGACAAGTAATAACCTCTTGAATACTCAGAATACAACCAACGATGATACATCAATAAGTCATAAAGATGTTGAGGTTTCTATTTCTGAAGGTGCAAGAAATTCCTTCTTCCCTTCCAAGGCCTCTCCAAGCCCATAA 1275 0.3922 MNENKNDCRGLIQQNHGLNGDFNSEFGNSFCQHFDLRESLAMAGGGGGGEAEQLPNIGTVKSSSTIMSRFESPASAFYAAEHCMGFAEYDSQVGNQSLSSQFYKVNDVEFPLYQSSREKLILDSANQPDSNFELSNTLQAMVKSQLNSNQCRGSPEKSNKISCGNFPGTKFLPIEQQKLFIDGVASFSRSSLFPNKGNQDHTVVRGSYNFPVAQLSFSSQQEKLPPTFSAGSVSNTLGNFSPNGTVVSSKTRIRWTNYLHEKFVECVNRLGGAEKATPKAILKMMDSDGLTIFHIKSHLQKYRIAKFMPESTQGKSDKRIHTEDVHHLDVKTGLQIREALQLQLDAQRHLHEQLEIQRKLQLRIEEQGRQLQKLFDQQQKTSNNLLNTQNTTNDDTSISHKDVEVSISEGARNSFFPSKASPSP 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00063 424 Pfam MYB-CC type transfactor, LHEQLE motif 334 381 IPR025756 -
Gabi4543g00063 424 Gene3D - 249 308 - -
Gabi4543g00063 424 FunFam Myb family transcription factor 249 307 - -
Gabi4543g00063 424 SUPERFAMILY Homeodomain-like 248 304 IPR009057 -
Gabi4543g00063 424 MobiDBLite consensus disorder prediction 382 396 - -
Gabi4543g00063 424 Pfam Myb-like DNA-binding domain 254 303 IPR001005 -
Gabi4543g00063 424 MobiDBLite consensus disorder prediction 382 424 - -
Gabi4543g00063 424 Coils Coil 337 377 - -
Gabi4543g00063 424 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 246 396 IPR044848 GO:0003700
Gabi4543g00063 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 250 305 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00063 Gabi-Chr4543 673822 676573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00063 241 384 G2-like Transcription Factor Family AT3G04450 53.378 8.05e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi4543g00063 Myb_DNA-binding 1.8e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00063 - - ccaj:109797364 584.334