Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00060 ATGGATACCCGCAAGAGGGGAAGACCCGAACCCGGCTTCAACATAAATGGCGGACTCAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGATGCCCATTTGGTGAGGGCTGTCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGTTGCCCAGATGATGCATCTAACACCTGCAGCAACTCCAGTATCTAGAAATGTTACCGCACCACCACCTGTACCTAATGGGTCCACACCACCCGCCGTTAAAACCCGCATATGCAACAAGTTTAATTCGGCTGAAGGTTGTAAATTTGGTGACAAATGCCATTTTGCCCATGGTGAATGGGAACTTGGCAAGTATATTGCTCCATCATTTGATGATCATCGTGCCATGGGACCCACTGCAGCAGGTCGTATTGCTGGTCGAATGGAGCCTCCTCCTGGTCCTGCCACTACCTTTGGTGCCAATGCCACTGCTAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACCGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGATCCAAACCTTAGAAACATTGAACTGGAGGGAAGTTTTGAACAAATTAAGGAAGCAAGTAACATGGTAAAGGAGTTACTGTTGACCCTGAAAATGTCTGCACCACCTAAAACAACCCCAGGTGTTCCTGGCGCCCCAGCCCATCCTGGAAGCAACTTGAAGACGAAGCTGTGTGAGAATTTCACAAAAGGATCTTGCACTTTTGGAGAAAGGTGTCACTTTGCACATGGAGCTGCTGAATTACGTAAATGA 879 0.4744 MDTRKRGRPEPGFNINGGLKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMHLTPAATPVSRNVTAPPPVPNGSTPPAVKTRICNKFNSAEGCKFGDKCHFAHGEWELGKYIAPSFDDHRAMGPTAAGRIAGRMEPPPGPATTFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKELLLTLKMSAPPKTTPGVPGAPAHPGSNLKTKLCENFTKGSCTFGERCHFAHGAAELRK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00060 292 FunFam Zinc finger CCCH domain-containing protein 94 131 - -
Gabi4543g00060 292 Gene3D K Homology domain, type 1 164 259 IPR036612 GO:0003723
Gabi4543g00060 292 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4543g00060 292 FunFam Zinc finger CCCH domain-containing protein 256 292 - -
Gabi4543g00060 292 SUPERFAMILY CCCH zinc finger 261 291 IPR036855 GO:0046872
Gabi4543g00060 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 286 IPR000571 GO:0046872
Gabi4543g00060 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 126 IPR000571 GO:0046872
Gabi4543g00060 292 ProSiteProfiles Type-1 KH domain profile. 168 232 - -
Gabi4543g00060 292 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Gabi4543g00060 292 SMART kh_6 167 237 IPR004087 GO:0003676
Gabi4543g00060 292 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Gabi4543g00060 292 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Gabi4543g00060 292 ProSiteProfiles Zinc finger C3H1-type profile. 261 288 IPR000571 GO:0046872
Gabi4543g00060 292 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 149 IPR045877 GO:0003729
Gabi4543g00060 292 Gene3D - 260 292 - -
Gabi4543g00060 292 Gene3D - 93 131 - -
Gabi4543g00060 292 Pfam KH domain 171 234 IPR004088 GO:0003723
Gabi4543g00060 292 CDD KH-I_AtC3H36_like 171 236 - -
Gabi4543g00060 292 SUPERFAMILY CCCH zinc finger 97 130 IPR036855 GO:0046872
Gabi4543g00060 292 ProSiteProfiles Zinc finger C3H1-type profile. 99 127 IPR000571 GO:0046872
Gabi4543g00060 292 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 158 238 IPR036612 GO:0003723
Gabi4543g00060 292 SMART c3hfinal6 261 287 IPR000571 GO:0046872
Gabi4543g00060 292 SMART c3hfinal6 99 126 IPR000571 GO:0046872
Gabi4543g00060 292 SMART c3hfinal6 34 61 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00060 Gabi-Chr4543 596811 600530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00060 35 137 C3H Transcription Factor Family AT1G68200 26.214 8.26e-07 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4543g00060 KH_1 3.4e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00060 - - gmx:100803981 565.844