Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00059 ATGGATACCCGCAAGAGGGGAAGACCCGAACCCGGCTTCAACATAAATGGCGGACTCAAGAAATCCAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGATGCCCATTTGGTGAGGGCTGTCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGTTGCCCAGATGATGCATCTAACACCTGCAGCAACTCCAGTATCTAGAAATGTTACCGGTGCCATGGGACCCACTGCAGCAGGTCGTATTGCTGGTCGAATGGAGCCTCCTCCTGGTCCTGCCACTACCTTTGGTGCCAATGCCACTGCTAAGATCAGTGTAGAAGCTTCCCTGGCTGGAGCAATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACCGGAGCCAAACTTTCAATTCGAGAGCATGAATCTGATCCAAACCTTAGAAACATTGAACTGGAGGGAAGTTTTGAACAAATTAAGGAAGCAAGTAACATGGTAAAGGAGTTACTGTTGACCCTGAAAATGTCTGCACCACCTAAAACAACCCCAGGTGTTCCTGGCGCCCCAGCCCATCCTGGAAGCAACTTGAAGACGAAGCTGTGTGAGAATTTCACAAAAGGATCTTGCACTTTTGGAGAAAGGTGTCACTTTGCACATGGAGCTGCTGAATTACGTAAATGA 717 0.4798 MDTRKRGRPEPGFNINGGLKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMHLTPAATPVSRNVTGAMGPTAAGRIAGRMEPPPGPATTFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKELLLTLKMSAPPKTTPGVPGAPAHPGSNLKTKLCENFTKGSCTFGERCHFAHGAAELRK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00059 238 FunFam Zinc finger CCCH domain-containing protein 202 238 - -
Gabi4543g00059 238 SMART c3hfinal6 207 233 IPR000571 GO:0046872
Gabi4543g00059 238 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Gabi4543g00059 238 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4543g00059 238 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Gabi4543g00059 238 Gene3D K Homology domain, type 1 110 205 IPR036612 GO:0003723
Gabi4543g00059 238 ProSiteProfiles Type-1 KH domain profile. 114 178 - -
Gabi4543g00059 238 CDD KH-I_AtC3H36_like 117 182 - -
Gabi4543g00059 238 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Gabi4543g00059 238 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 104 184 IPR036612 GO:0003723
Gabi4543g00059 238 PANTHER CCCH ZINC FINGER/TIS11-RELATED 190 237 IPR045877 GO:0003729
Gabi4543g00059 238 SUPERFAMILY CCCH zinc finger 207 237 IPR036855 GO:0046872
Gabi4543g00059 238 ProSiteProfiles Zinc finger C3H1-type profile. 207 234 IPR000571 GO:0046872
Gabi4543g00059 238 Gene3D - 206 238 - -
Gabi4543g00059 238 SMART kh_6 113 183 IPR004087 GO:0003676
Gabi4543g00059 238 Pfam KH domain 117 180 IPR004088 GO:0003723
Gabi4543g00059 238 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 209 232 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00059 Gabi-Chr4543 596808 600532 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4543g00059 KH_1 2.4e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00059 - - thj:104826768 337.806