Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00056 ATGGGAATGGACAGAGTGCTATGTACCTATGAATCCTTGGATGAAGCGTTCCAAATTGGGAAAGAGACATATCAGGGGCAGCAATACAGCCATATTTACTTCGCTCGCCTTCACTTGATGAGAACTCTCTTGTATTCCCTTGTCCCCCATTGGAAACCTAATTCTCCTGTATGCACAGTTTTGGGATTGGAAGAGGGCAAGGAGTGTGTCATTGTTGGAACCCTCTATAAACACATGAAGCTCAAACCTTGCATACTTGATGAGTATTCTAAGCAGAGATCTGCGGTTCCACTCGTCAAGCCCCATAACTTCGTGCACCCTGATGATCATCTAATTTTGGAAGATGAAAGTGGGAGAGTTAAGCTCGGTGGGAATCTCATTTCACCGTCTGTATATGTAACAGGAAATGTGGTTTCTTTATATGGAAAGGAGGCTGGGGCAGGTGAGTTTTTGGTTCAGGAGGTCCTAGAAGCTGGCTTACCACCACAGATAGAACTTCCCCTTAAATCAAGGGAAGACAAATATCTTGTTCTTGTGTCAGGGTTAAGTATTGGCAGCAGCAACTCTAATCCTCTTCAGTTTCAGCTTCTCATTGATCATATCACTGGGCATTTAGGAGATGAGAAGGAGCAAAGTATTGCATCACAAATTGTTCGTGTTGTCATTGCTGGAAATTCTGTTGAGATACCTAGTGGACTTCTTAATGGACAGAATTTGTCTTCAAAGGATCTCTCACGGATGGCTGAACCAATAAGGGAGCTAGATATTCTGTTGAATCAGATTGCTGCTAGTTTACCTTTGGATATCATGCCAGGAACCAGTGACCCATCTAATTTCTCATTACCACAGCAGCCATTGCATAGATGCCTTTTCCCTGGGTCATCAGCTTATAACACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATAATATCAGGTTTCTAGGGACATCAGGTCAGAATGTAGATGATCTTGAGAAGTATTCGGATGCAAAAGATAAACTTGAATTTATGGAAAGGACATTAAGATGGAGGCATTTGGCACCCACTGCACCTAATACTCTTGGGTGCTATCCTTATACTGATAGGGATCCTTTCTTCATTGAGAGCTGTCCTCACGTGTACTTTATTGGCAATCAGGATAAATATGATACTCGTGTGATAAAGGGATCAGAAGGGCAATTGGTGAGACTCATATGTGTTCCTAAATTCAGCGAAACTGGAGTTGCTGTTATGTTAAATCTGAGGGATCTTGAATGCCATGCTCTCAGTTTTGGAACTCAGTTCAGCTCGTAA 1302 0.4209 MGMDRVLCTYESLDEAFQIGKETYQGQQYSHIYFARLHLMRTLLYSLVPHWKPNSPVCTVLGLEEGKECVIVGTLYKHMKLKPCILDEYSKQRSAVPLVKPHNFVHPDDHLILEDESGRVKLGGNLISPSVYVTGNVVSLYGKEAGAGEFLVQEVLEAGLPPQIELPLKSREDKYLVLVSGLSIGSSNSNPLQFQLLIDHITGHLGDEKEQSIASQIVRVVIAGNSVEIPSGLLNGQNLSSKDLSRMAEPIRELDILLNQIAASLPLDIMPGTSDPSNFSLPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNIRFLGTSGQNVDDLEKYSDAKDKLEFMERTLRWRHLAPTAPNTLGCYPYTDRDPFFIESCPHVYFIGNQDKYDTRVIKGSEGQLVRLICVPKFSETGVAVMLNLRDLECHALSFGTQFSS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00056 433 Pfam DNA polymerase alpha/epsilon subunit B 177 385 IPR007185 GO:0003677|GO:0006260
Gabi4543g00056 433 FunFam DNA polymerase delta subunit 2 34 158 - -
Gabi4543g00056 433 FunFam DNA polymerase delta small subunit 160 433 - -
Gabi4543g00056 433 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 7 427 IPR024826 -
Gabi4543g00056 433 CDD MPP_PolD2_C 175 427 IPR041863 -
Gabi4543g00056 433 Gene3D - 167 432 - -
Gabi4543g00056 433 Pfam DNA polymerase delta subunit OB-fold domain 28 155 IPR040663 -
Gabi4543g00056 433 Gene3D - 35 158 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00056 4 432 Core DNA Replication Machinery Family AT2G42120 75.524 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00056 K02328 - gmx:100805951 796.193