Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00054 ATGTTAGCGTGGCTTGCAAATCTGATTTTGAAGTGCTGGAAGTGTATCAGGAAGTTTGCTGTCAGGGGCAATAATGATGCTCTGCTGTGGTGCAGGGACCTTGTGCAGCATTCATGTGGTGAATTCTCCTTCGCCGTGGTTCAGGCCAATTTTGTTGTTGAGGATAATAGCCAGGTTGAGACTGGTTCTGATGCCATCTTTGTTGGAATATATGATGGCCATGGTGGTGTTGATGCTTCCCGTTACGTCAGGGACAACCTCTTCAGGCATTTTATTGGTAATGCTCAGGAGAGACGTACTATATCTGAAGAAAGTCTAAGGGATGCTATTGCTGCTACCGAGGAAGGGTTTCTGGCTGATGTTGCAAGAACTTTTTCAAGTAGGCCATTGATAGCATCAATGGGTTCTTGTTGTCTGACTGGTGTTATCTGGAAAGGGATACTACATCTTGCCAATCTTGGAGACTCACGTGCTGTAATTGGTTCTGTTGGTGAATCTAACCATATCATTGCTGAGCAGTTGACCGTTGAACACAATGCTAGTAGAGAAGAGATTAGACAAGAATTGATGTCTTTACATCCAGAAGATCCAGAAATTGTGACTTTTAGTCGTGGATCATGGCGAATTAAAGGCATCATTCAGGTATCAAGGACTATAGGAGATGCATATTTGAAGCGACCAGAGTTTGCTCTTGGTCCAGATCACCCACGGTTCCACTTGCGTGAACCTATTACTCGACCTGTGCTAACAGCAGAACCATTTCTGCTTTCAAGAACTTTACAACCCAATGATAGATTCCTTATATTTGCATCTGATGGACTTTGGGAACTCCTCACTAATCAGGAAGCAGTTGATATTGTTTCTGTAAACCAACGAAATGGGATTGCAAAAAAACTTATTAAGGCTGCTCAAAAGGTGGCAGCTACAAAAATGAGAGTTGAATATAAAAGCCTTCAGAAGATTCGTAGTGGGGCAAGGCGGGATTATCATGATGATATCACTGTGATTGTTGTCTTCATAGACCATGAGTTGTTTGAGAACACAGTTACTGTTCCAGAGTTATCATTCGTTGGTTTCATTGATTCGGCTGGACCATCAGCTTTTCAAATTGAACAGGCAACTAGGTGA 1128 0.4255 MLAWLANLILKCWKCIRKFAVRGNNDALLWCRDLVQHSCGEFSFAVVQANFVVEDNSQVETGSDAIFVGIYDGHGGVDASRYVRDNLFRHFIGNAQERRTISEESLRDAIAATEEGFLADVARTFSSRPLIASMGSCCLTGVIWKGILHLANLGDSRAVIGSVGESNHIIAEQLTVEHNASREEIRQELMSLHPEDPEIVTFSRGSWRIKGIIQVSRTIGDAYLKRPEFALGPDHPRFHLREPITRPVLTAEPFLLSRTLQPNDRFLIFASDGLWELLTNQEAVDIVSVNQRNGIAKKLIKAAQKVAATKMRVEYKSLQKIRSGARRDYHDDITVIVVFIDHELFENTVTVPELSFVGFIDSAGPSAFQIEQATR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00054 375 CDD PP2Cc 54 340 IPR001932 -
Gabi4543g00054 375 Pfam Protein phosphatase 2C 38 309 IPR001932 -
Gabi4543g00054 375 ProSitePatterns PPM-type phosphatase domain signature. 67 75 IPR000222 GO:0043169
Gabi4543g00054 375 FunFam Probable protein phosphatase 2C 42 32 348 - -
Gabi4543g00054 375 Gene3D - 27 349 IPR036457 -
Gabi4543g00054 375 ProSiteProfiles PPM-type phosphatase domain profile. 41 340 IPR001932 -
Gabi4543g00054 375 PANTHER PROTEIN PHOSPHATASE 38 338 IPR015655 GO:0004722|GO:0006470
Gabi4543g00054 375 SUPERFAMILY PP2C-like 50 341 IPR036457 -
Gabi4543g00054 375 SMART PP2C_4 21 338 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00054 Gabi-Chr4543 533518 535257 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00054 1 370 PP2C-type Phosphatase Gene Family AT5G06750 56.777 9.36e-155 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00054 K01102 - gmx:100806476 499.59