Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00044 ATGGGGGAAGAGACTTCCGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGTCCGGAGCCTGCAACTGGGACCATAAGCAATGAAGGTATGAACTTGGATGATTGGATTGGGGAGCCTATTCATAGAATCAGTGAAGCTGTAAGGCTTAGGGCGAGACAGAGGTGGAGATGGCGGCACCTTCCAATCCTTCCACCTGAAGTTCATGTTCACATTCCAACACCCGAAGCACCGGGGCATTTTCATATCCCGCCTGAAGCTCAAAATATCTCGATGGAATTGAACCAGTTTTTGGTCAATTCCGGTAATGGAAGCATTTTACAGGCCGGGGAAGGCAGTGTGGCGGCTGAGGAGAGAACGGAGGAGGTGCCAAAAGCATGTGAGAACAACAATGGTTTTACTGAGGATGAGACATCAGAGAAGAAGGATGATGTTGAAAAGGGTAGTGGCAATGATGGGGACTTTTTTGATTGTAATATCTGTTTGGACCTGGCCAGGGATCCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCCTATATCGATGGCTGCATCTGCATTCTGATGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTGACTCTTAAAAGTGTTACACCAATATATGGCCGTGGAAACAATGTCCGTGGCCCTGAGGAGGATTCCACTCTTAAAATCCCTCTCAGACCCCATGCAAGGCGCGTTGAGAGTCTGAGACAAACCATTCAGAGAAATGCATTTGCTCTCCCTGTGGAAGAGATGATTCGGCGTCTTGGAAGCAGAATTGATCTTACTAGGGATTTAGTTCCCCCGCATGAACCAGACAATGCTCGTGAAACAGCAGATAGAACTAGTTCCTTGCTAAGTAGGTTTTTGACATCGCGAGGCTTGCGGAGAGAGCAGAATCCTGGGACTCCCCCAGATGATGTAGTGGGATTGACACAGAACAACGTTGGTAATCCTGAGGCTGGGGATAACCGCAGGGTGCACTCCCTTCTGCTTCGAAGAACACAATCACAAAGGGCAACACTTACAACTCTTTCATCAGCTCTGAATTCTGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCAATCCATTAGGTAGAAACCAAGAACAGCCTCCAGTTGATGACAGAGATTCCTTTTCGAGCATTGGTGCTGTCATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACATCATCTTCTAAAAGGAGAAACGATGCTTCAAGAGCGTCCGATGTGGATAGTGGAGATTCTCGTGCTCCAAGGCGTAGGCGTTTGAACTGA 1323 0.4717 MGEETSDAMNLDLNLGPGPEPATGTISNEGMNLDDWIGEPIHRISEAVRLRARQRWRWRHLPILPPEVHVHIPTPEAPGHFHIPPEAQNISMELNQFLVNSGNGSILQAGEGSVAAEERTEEVPKACENNNGFTEDETSEKKDDVEKGSGNDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRGNNVRGPEEDSTLKIPLRPHARRVESLRQTIQRNAFALPVEEMIRRLGSRIDLTRDLVPPHEPDNARETADRTSSLLSRFLTSRGLRREQNPGTPPDDVVGLTQNNVGNPEAGDNRRVHSLLLRRTQSQRATLTTLSSALNSAERLVEAYFRSNPLGRNQEQPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSKRRNDASRASDVDSGDSRAPRRRRLN 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00044 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 215 IPR013083 -
Gabi4543g00044 440 MobiDBLite consensus disorder prediction 134 148 - -
Gabi4543g00044 440 ProSiteProfiles Zinc finger RING-type profile. 158 199 IPR001841 -
Gabi4543g00044 440 MobiDBLite consensus disorder prediction 294 330 - -
Gabi4543g00044 440 Pfam Zinc finger, C3HC4 type (RING finger) 158 198 - -
Gabi4543g00044 440 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 125 319 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi4543g00044 440 MobiDBLite consensus disorder prediction 120 148 - -
Gabi4543g00044 440 SMART ring_2 158 198 IPR001841 -
Gabi4543g00044 440 MobiDBLite consensus disorder prediction 407 440 - -
Gabi4543g00044 440 SUPERFAMILY RING/U-box 153 211 - -
Gabi4543g00044 440 MobiDBLite consensus disorder prediction 418 440 - -
Gabi4543g00044 440 CDD RING-HC_AtRMA-like 156 199 - -
Gabi4543g00044 440 FunFam E3 ubiquitin-protein ligase RMA3 126 247 - -
Gabi4543g00044 440 MobiDBLite consensus disorder prediction 310 324 - -
Gabi4543g00044 440 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00044 Gabi-Chr4543 422524 424755 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00044 1 431 C3H Transcription Factor Family AT3G58030 53.795 6.55e-143 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00044 K10666 - gmx:100811099 737.258