Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00041 ATGGAGCTGGCTCTGAGTTTAGGCGATGCACCAAAGCACTTCTCTTTGCTTGACAACACTACAAAATTACCCAACAAAGATTCTGTTTGTTTAAGCATAGCACTAGGAGGAGCTGGTACTTTAGCTGGAAAATCCTCGAACGAAAGAAGGGTTTCCTCAGATCCACCGGTTCAGCTCGAACTTCTTCCTTCAACACCGGTTCATCGATCCCATCCTTCTTCACATCTTCGAATTCCATGGCTCAACGATGCACTTGGTATGGAACGCGTAACATCAGAGGAACCGACGAGGGCGTTTGATGTGAACCGGTTACCGTTGCAGGCGGTGGACACCGACGACAGTGCTGCACTTTCATCCCCAAACAGCGTGTCATCTTTTCAAATGGATTTCTGTATCAGAACCAGAAGAGAGAACGAGGGTGAAGGTGCTGACAAAACTAGTGATGAAGAAGAAAATGGCTCAACACGAAAGAAACTCAGACTCTCTAAGGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCTAAGCAGAAACTTGCTCTTGCAAAACAGTTAAATCTTCGTCCTCGTCAAGTAGAAGTCTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAAACGGAGGTGGATTGTGAGTATTTAAAGAGATGCTGTGAGACTCTGACAGAAGAGAATAGGAGGTTGCAGAAGGAACTTCAAGAACTGAGGGCTTTGAAAACTTCTCAACCATTCTATATGCAGCTTCCAGCTACCACACTCACCATGTGTCCCTCTTGTGAACGGGTCGCCACCAACACCAACGGAACCGCCGCTGCTTCCGCCACCAATAATAATAATAATAATAATGTTTCTCAAGTCTCTGCCGCGTTATCTCTTGGCAAGCCCAAAACATTGCCATTACTTAATGGTCAAGCCCAGCCTCAACAGGCCCAGAAGGCCCATCAGATTGCTTCTTGA 978 0.4601 MELALSLGDAPKHFSLLDNTTKLPNKDSVCLSIALGGAGTLAGKSSNERRVSSDPPVQLELLPSTPVHRSHPSSHLRIPWLNDALGMERVTSEEPTRAFDVNRLPLQAVDTDDSAALSSPNSVSSFQMDFCIRTRRENEGEGADKTSDEEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTNGTAAASATNNNNNNNVSQVSAALSLGKPKTLPLLNGQAQPQQAQKAHQIAS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00041 325 Coils Coil 218 248 - -
Gabi4543g00041 325 MobiDBLite consensus disorder prediction 308 325 - -
Gabi4543g00041 325 SMART halz 212 255 IPR003106 GO:0006355|GO:0043565
Gabi4543g00041 325 ProSitePatterns 'Homeobox' domain signature. 187 210 IPR017970 GO:0000981|GO:0006355
Gabi4543g00041 325 MobiDBLite consensus disorder prediction 137 160 - -
Gabi4543g00041 325 Gene3D - 160 210 - -
Gabi4543g00041 325 Pfam Homeobox associated leucine zipper 212 246 IPR003106 GO:0006355|GO:0043565
Gabi4543g00041 325 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 287 - -
Gabi4543g00041 325 CDD homeodomain 156 213 IPR001356 GO:0003677
Gabi4543g00041 325 SMART HOX_1 154 216 IPR001356 GO:0003677
Gabi4543g00041 325 Pfam HD-ZIP protein N terminus 29 125 IPR006712 GO:0005634
Gabi4543g00041 325 FunFam Homeobox-leucine zipper protein 18 142 217 - -
Gabi4543g00041 325 MobiDBLite consensus disorder prediction 303 325 - -
Gabi4543g00041 325 ProSiteProfiles 'Homeobox' domain profile. 152 212 IPR001356 GO:0003677
Gabi4543g00041 325 Pfam Homeodomain 156 210 IPR001356 GO:0003677
Gabi4543g00041 325 SUPERFAMILY Homeodomain-like 151 213 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00041 Gabi-Chr4543 386461 387775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00041 27 271 Homeobox Transcription Factor Family AT2G44910 49.474 2.61e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi4543g00041 HD-ZIP_N 4.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00041 K09338 - qsu:112028347 365.54