Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00027 ATGGCTCCGGGAGGAAGTGCTTTCAAAGAAGTTCTTGAATCTCACCTGATGTCTTCAGATTATGAAACAGGCAAGGCTAAATCTGAGGCCAAAAGTAACAGTACATTTACAAAATCTGCTGTTGGGTTGAGCGGAAAGAATGGAGTTAGTTCAAAGAATGGCGTGCATGACTTACTTGGGTGCCCTGTTTGCAAGAATTTGATGTATCCCCCAATTTACCAGTGCCCAAATGGCCATACATTATGTTCAAATTGTAAGATTGAAGTCCATAATATCTGCCCAACCTGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTGGAAAAAGTGGCAGAATCGTTGGAGCTTCCTTGCAGATTTCAGAGTCTAGGTTGTCATGATATATTCCCATACTACACTAAGCTTAAGCATGAGCAAAATTGTGGATTTCGTCCATACAACTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGACATTCCATCTCTTGTTGCCCATCTCAAGGATGATCACAACGTTGACATGCATGATGGGTGCACCTTCAATCATAGATATGTCAAGGCAAATTCACATGAAGTTGAAAGTGCCACATGGATGCTAACTGTTTTTAATAGTTTTGGAAGACAATTCTGCTTGCACTTTGAGGCATTCCAGCTTGGGACTGCTCCAGTTTATATGGCCTTTTTACGGTTTATGGGCGATGACAACGAAGCAAAGAAATTCAGCTACAGCTTGGAAGTTGGTGCAAATGGCCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGTGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATCATTCAGAGGAATCTAGCCCTTTATTTTTCTGGTGGGGATAGACAGGAGTTGAAGTTGAGAATCACTGGTCGTATTTGGAAAGAAGATTAG 930 0.4215 MAPGGSAFKEVLESHLMSSDYETGKAKSEAKSNSTFTKSAVGLSGKNGVSSKNGVHDLLGCPVCKNLMYPPIYQCPNGHTLCSNCKIEVHNICPTCHHDLGNIRCLALEKVAESLELPCRFQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPSLVAHLKDDHNVDMHDGCTFNHRYVKANSHEVESATWMLTVFNSFGRQFCLHFEAFQLGTAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRITGRIWKED 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00027 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 112 - -
Gabi4543g00027 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 171 302 IPR008974 GO:0005515
Gabi4543g00027 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Gabi4543g00027 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 169 IPR013083 -
Gabi4543g00027 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 113 IPR013083 -
Gabi4543g00027 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 38 308 - -
Gabi4543g00027 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gabi4543g00027 309 SUPERFAMILY TRAF domain-like 114 306 - -
Gabi4543g00027 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Gabi4543g00027 309 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Gabi4543g00027 309 SUPERFAMILY RING/U-box 54 103 - -
Gabi4543g00027 309 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Gabi4543g00027 309 CDD RING-HC_SIAHs 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00027 Gabi-Chr4543 300754 305506 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00027 1 309 C3H Transcription Factor Family AT2G41980 78.964 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00027 K04506 - gmx:100813966 615.92