Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00026 ATGTTGTGCTGCGGAGGTGCAGAGGAAGAGAGCAGTGGCCCACCTGCAAACCAATACACTGCACCACCTAGAGGGGGTAACACCTACGGTGGAGGAGGTAACATATTCATTTTTATATATGGCAATGATAGAGGAGAGCCAAGGGGCAATGTTGTCAAGAGTGGTGCTCCACAGCAAGGATTACCGATTGAGATACCCGTTATGCCATTGGACGAGTTAAATAGGTTAACAGGAAACTTTGGTGAAAAGGCTTATATTGGCGAAGGTTCCTATGGAAGGGTTTACTATGCAAAATTGAGTAATGGTACTGATGCTGCAATTAAGAAGCTGGATACTAGTTCTTCACCAGAACCTGACTCCGATTTTGCGGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATCAAAATTTTGTGGAGTTGATTGGATATTGTCTAGAAGCAAACAACAGACTTTTGGTTTACCAATATGCAAGTTTGGGTTCTTTGCATGACATATTACATGGAAGGAAGGGTGTACAAGGTGCTGAACCTGGCCCAGTTTTAAGTTGGAACCAGAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTATCTTCATGAAAAGGTTCAGCCTTCTATAGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTCTTCAATGACTATGAGGCCAAGATTGCTGATTTCAGCTTGACAAATCAGTCTTCTGACACAGCAGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGTTATCATGCTCCAGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGTGAGGACAAAGTTAAACAATGTGTGGATCCTAAACTAAACAATGACTATCCACCAAAGGCTATTGCTAAGTTGGCAGCTGTTGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCCGGCCAAACATGACAATTGTTGTCAAAGCTCTTCAGCCACTTCTCAATTCAAGACCGGCTGGTCCTGACTCTAGTGCTTGA 1122 0.4349 MLCCGGAEEESSGPPANQYTAPPRGGNTYGGGGNIFIFIYGNDRGEPRGNVVKSGAPQQGLPIEIPVMPLDELNRLTGNFGEKAYIGEGSYGRVYYAKLSNGTDAAIKKLDTSSSPEPDSDFAAQLSVVSRLKHQNFVELIGYCLEANNRLLVYQYASLGSLHDILHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEYLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSRPAGPDSSA 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00026 373 ProSitePatterns Tyrosine protein kinases specific active-site signature. 208 220 IPR008266 GO:0004672|GO:0006468
Gabi4543g00026 373 SUPERFAMILY Protein kinase-like (PK-like) 61 358 IPR011009 -
Gabi4543g00026 373 Gene3D Phosphorylase Kinase; domain 1 57 156 - -
Gabi4543g00026 373 SMART tyrkin_6 80 358 IPR020635 GO:0004713|GO:0006468
Gabi4543g00026 373 Gene3D Transferase(Phosphotransferase) domain 1 158 368 - -
Gabi4543g00026 373 FunFam PTI1-like tyrosine-protein kinase 3 158 367 - -
Gabi4543g00026 373 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Gabi4543g00026 373 Pfam Protein tyrosine and serine/threonine kinase 85 358 IPR001245 GO:0004672|GO:0006468
Gabi4543g00026 373 ProSiteProfiles Protein kinase domain profile. 80 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4543g00026 373 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 366 - -
Gabi4543g00026 373 FunFam probable protein kinase At2g41970 53 156 - -
Gabi4543g00026 373 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00026 Gabi-Chr4543 294156 296366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00026 65 365 Receptor kinase-like Gene Family AT3G58690 45.364 7.93e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gabi4543g00026 PK_Tyr_Ser-Thr 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00026 - - gmx:100812507 662.529