Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00025 ATGTTGTGCTGCGGAGGTGCAGAGGAAGAGAGCAGTGGCCCACCTGCAAACCAATACACTGCACCACCTAGAGGGGGTAACACCTACGGTGGAGGAGGCAATGATAGAGGAGAGCCAAGGGGCAATGTTGTCAAGAGTGGTGCTCCACAGCAAGGATTACCGATTGAGATACCCGTTATGCCATTGGACGAGTTAAATAGGTTAACAGGAAACTTTGGTGAAAAGGCTTATATTGGCGAAGGTTCCTATGGAAGGGTTTACTATGCAAAATTGAGTAATGGTACTGATGCTGCAATTAAGAAGCTGGATACTAGTTCTTCACCAGAACCTGACTCCGATTTTGCGGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATCAAAATTTTGTGGAGTTGATTGGATATTGTCTAGAAGCAAACAACAGACTTTTGGTTTACCAATATGCAAGTTTGGGTTCTTTGCATGACATATTACATGGAAGGAAGGGTGTACAAGGTGCTGAACCTGGCCCAGTTTTAAGTTGGAACCAGAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTATCTTCATGAAAAGGTTCAGCCTTCTATAGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTCTTCAATGACTATGAGGCCAAGATTGCTGATTTCAGCTTGACAAATCAGTCTTCTGACACAGCAGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGTTATCATGCTCCAGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGTGAGGACAAAGTTAAACAATGTGTGGATCCTAAACTAAACAATGACTATCCACCAAAGGCTATTGCTAAGTTGGCAGCTGTTGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCCGGCCAAACATGACAATTGTTGTCAAAGCTCTTCAGCCACTTCTCAATTCAAGACCGGCTGGTCCTGACTCTAGTGCTTGA 1098 0.4408 MLCCGGAEEESSGPPANQYTAPPRGGNTYGGGGNDRGEPRGNVVKSGAPQQGLPIEIPVMPLDELNRLTGNFGEKAYIGEGSYGRVYYAKLSNGTDAAIKKLDTSSSPEPDSDFAAQLSVVSRLKHQNFVELIGYCLEANNRLLVYQYASLGSLHDILHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEYLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSRPAGPDSSA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00025 365 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4543g00025 365 Pfam Protein tyrosine and serine/threonine kinase 77 350 IPR001245 GO:0004672|GO:0006468
Gabi4543g00025 365 SUPERFAMILY Protein kinase-like (PK-like) 53 350 IPR011009 -
Gabi4543g00025 365 Gene3D Phosphorylase Kinase; domain 1 49 148 - -
Gabi4543g00025 365 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 358 - -
Gabi4543g00025 365 FunFam PTI1-like tyrosine-protein kinase 3 150 359 - -
Gabi4543g00025 365 FunFam probable protein kinase At2g41970 45 148 - -
Gabi4543g00025 365 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Gabi4543g00025 365 SMART tyrkin_6 72 350 IPR020635 GO:0004713|GO:0006468
Gabi4543g00025 365 ProSitePatterns Tyrosine protein kinases specific active-site signature. 200 212 IPR008266 GO:0004672|GO:0006468
Gabi4543g00025 365 MobiDBLite consensus disorder prediction 1 50 - -
Gabi4543g00025 365 Gene3D Transferase(Phosphotransferase) domain 1 150 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00025 Gabi-Chr4543 294156 296366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00025 1 351 Receptor kinase-like Gene Family AT4G02010 42.373 5.95e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gabi4543g00025 PK_Tyr_Ser-Thr 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00025 - - gmx:100786291 667.537