Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00024 ATGTTGTGCTGCGGAGGTGCAGAGGAAGAGAGCAGTGGCCCACCTGCAAACCAATACACTGCACCACCTAGAGGGGGTAACACCTACGGTGGAGGAGGAGAGCCAAGGGGCAATGTTGTCAAGAGTGGTGCTCCACAGCAAGGATTACCGATTGAGATACCCGTTATGCCATTGGACGAGTTAAATAGGTTAACAGGAAACTTTGGTGAAAAGGCTTATATTGGCGAAGGTTCCTATGGAAGGGTTTACTATGCAAAATTGAGTAATGGTACTGATGCTGCAATTAAGAAGCTGGATACTAGTTCTTCACCAGAACCTGACTCCGATTTTGCGGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATCAAAATTTTGTGGAGTTGATTGGATATTGTCTAGAAGCAAACAACAGACTTTTGGTTTACCAATATGCAAGTTTGGGTTCTTTGCATGACATATTACATGGAAGGAAGGGTGTACAAGGTGCTGAACCTGGCCCAGTTTTAAGTTGGAACCAGAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTATCTTCATGAAAAGGTTCAGCCTTCTATAGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTCTTCAATGACTATGAGGCCAAGATTGCTGATTTCAGCTTGACAAATCAGTCTTCTGACACAGCAGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGTTATCATGCTCCAGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGTGAGGACAAAGTTAAACAATGTGTGGATCCTAAACTAAACAATGACTATCCACCAAAGGCTATTGCTAAGTTGGCAGCTGTTGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCCGGCCAAACATGACAATTGTTGTCAAAGCTCTTCAGCCACTTCTCAATTCAAGACCGGCTGGTCCTGACTCTAGTGCTTGA 1086 0.4411 MLCCGGAEEESSGPPANQYTAPPRGGNTYGGGGEPRGNVVKSGAPQQGLPIEIPVMPLDELNRLTGNFGEKAYIGEGSYGRVYYAKLSNGTDAAIKKLDTSSSPEPDSDFAAQLSVVSRLKHQNFVELIGYCLEANNRLLVYQYASLGSLHDILHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEYLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSRPAGPDSSA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00024 361 Gene3D Transferase(Phosphotransferase) domain 1 146 356 - -
Gabi4543g00024 361 Pfam Protein tyrosine and serine/threonine kinase 73 346 IPR001245 GO:0004672|GO:0006468
Gabi4543g00024 361 ProSitePatterns Protein kinases ATP-binding region signature. 74 97 IPR017441 GO:0005524
Gabi4543g00024 361 ProSiteProfiles Protein kinase domain profile. 68 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4543g00024 361 SUPERFAMILY Protein kinase-like (PK-like) 49 346 IPR011009 -
Gabi4543g00024 361 SMART tyrkin_6 68 346 IPR020635 GO:0004713|GO:0006468
Gabi4543g00024 361 FunFam probable protein kinase At2g41970 41 144 - -
Gabi4543g00024 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 354 - -
Gabi4543g00024 361 PIRSF ILK 52 354 - -
Gabi4543g00024 361 MobiDBLite consensus disorder prediction 1 42 - -
Gabi4543g00024 361 FunFam PTI1-like tyrosine-protein kinase 3 146 355 - -
Gabi4543g00024 361 Gene3D Phosphorylase Kinase; domain 1 45 144 - -
Gabi4543g00024 361 ProSitePatterns Tyrosine protein kinases specific active-site signature. 196 208 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00024 Gabi-Chr4543 294156 296366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00024 1 347 Receptor kinase-like Gene Family AT4G02010 42.857 1.10e-86 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gabi4543g00024 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00024 - - gmx:100812507 659.833