Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4543g00023 ATGTTGTGCTGCGGAGGTGCAGAGGAAGAGAGCAGTGGCCCACCTGCAAACCAATACACTGCACCACCTAGAGGGGGTAACACCTACGGCAATGATAGAGGAGAGCCAAGGGGCAATGTTGTCAAGAGTGGTGCTCCACAGCAAGGATTACCGATTGAGATACCCGTTATGCCATTGGACGAGTTAAATAGGTTAACAGGAAACTTTGGTGAAAAGGCTTATATTGGCGAAGGTTCCTATGGAAGGGTTTACTATGCAAAATTGAGTAATGGTACTGATGCTGCAATTAAGAAGCTGGATACTAGTTCTTCACCAGAACCTGACTCCGATTTTGCGGCTCAGTTATCAGTTGTTTCAAGACTGAAGCATCAAAATTTTGTGGAGTTGATTGGATATTGTCTAGAAGCAAACAACAGACTTTTGGTTTACCAATATGCAAGTTTGGGTTCTTTGCATGACATATTACATGGAAGGAAGGGTGTACAAGGTGCTGAACCTGGCCCAGTTTTAAGTTGGAACCAGAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTATCTTCATGAAAAGGTTCAGCCTTCTATAGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTCTTCAATGACTATGAGGCCAAGATTGCTGATTTCAGCTTGACAAATCAGTCTTCTGACACAGCAGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGTTATCATGCTCCAGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTAGATCACACAATGCCCAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGTGAGGACAAAGTTAAACAATGTGTGGATCCTAAACTAAACAATGACTATCCACCAAAGGCTATTGCTAAGTTGGCAGCTGTTGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCCGGCCAAACATGACAATTGTTGTCAAAGCTCTTCAGCCACTTCTCAATTCAAGACCGGCTGGTCCTGACTCTAGTGCTTGA 1089 0.4389 MLCCGGAEEESSGPPANQYTAPPRGGNTYGNDRGEPRGNVVKSGAPQQGLPIEIPVMPLDELNRLTGNFGEKAYIGEGSYGRVYYAKLSNGTDAAIKKLDTSSSPEPDSDFAAQLSVVSRLKHQNFVELIGYCLEANNRLLVYQYASLGSLHDILHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEYLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSRPAGPDSSA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4543g00023 362 ProSitePatterns Tyrosine protein kinases specific active-site signature. 197 209 IPR008266 GO:0004672|GO:0006468
Gabi4543g00023 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Gabi4543g00023 362 Gene3D Phosphorylase Kinase; domain 1 46 145 - -
Gabi4543g00023 362 Pfam Protein tyrosine and serine/threonine kinase 74 347 IPR001245 GO:0004672|GO:0006468
Gabi4543g00023 362 Gene3D Transferase(Phosphotransferase) domain 1 147 357 - -
Gabi4543g00023 362 MobiDBLite consensus disorder prediction 1 39 - -
Gabi4543g00023 362 SUPERFAMILY Protein kinase-like (PK-like) 50 347 IPR011009 -
Gabi4543g00023 362 SMART tyrkin_6 69 347 IPR020635 GO:0004713|GO:0006468
Gabi4543g00023 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 355 - -
Gabi4543g00023 362 ProSiteProfiles Protein kinase domain profile. 69 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4543g00023 362 FunFam probable protein kinase At2g41970 42 145 - -
Gabi4543g00023 362 FunFam PTI1-like tyrosine-protein kinase 3 147 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4543g00023 Gabi-Chr4543 294156 296366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4543g00023 54 354 Receptor kinase-like Gene Family AT3G58690 45.364 3.32e-86 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Gabi4543g00023 PK_Tyr_Ser-Thr 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4543g00023 - - gmx:100812507 676.781