Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4538g00002 ATGTATTGGGGGGGAGTTATGGCAGGCCACATGGGTGGGGGTGTCCTAGAAGAGGAGGTATGGAGGAAGGGACCATGGACTGCTGAAGAGGATAGATTGCTTATTGAGTATGTCAAGCTGCATGGTGAAGGTAGATGGAACTCTGTTGCAAGGCTTGCAGGATTGAAAAGAAATGGGAAGAGCTGCAGATTGAGATGGGTGAATTATCTGAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTCTTGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACAGATAATGAGATAAAGAATTATTGGAGAACCCATTTCAAGAAAAAGGCAAAAAGTCCCTCTGATGCTGCAGAGAAGGCTAGAAATAGACTCCTGAGGAAGCAGCAATTTCACCAGCAACAACAGTTGCAGCAGCAGCAGGTACAACAGCAACAGCAACAACAACAACTGCAATTCAACTTGGACATGAAAGGGATCATGGCCTTGCTTGATGACAACAACAGTCATAGAGTGCCATATACATCTCAACTGAGACAAGAAATGGTCAACATGTACCCAAACACCACAGAAGAACATGGATACTTATACTCTATGCTCAATGGCAACACCTCAGCACCGGAGGCCTCAACAGAAGAAACTTTCTGGGATGGACTGTGGAACTTGGATGATGTTCATGGCAATTTCAGTGTAGCTAATGCAACTGCAAACAAAGCTGGTCTATACAATTTAGTTGCTCCCTTTTGTTAA 792 0.4482 MYWGGVMAGHMGGGVLEEEVWRKGPWTAEEDRLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKARNRLLRKQQFHQQQQLQQQQVQQQQQQQQLQFNLDMKGIMALLDDNNSHRVPYTSQLRQEMVNMYPNTTEEHGYLYSMLNGNTSAPEASTEETFWDGLWNLDDVHGNFSVANATANKAGLYNLVAPFC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4538g00002 263 FunFam MYB-related transcription factor 80 124 - -
Gabi4538g00002 263 SMART sant 22 72 IPR001005 -
Gabi4538g00002 263 SMART sant 75 123 IPR001005 -
Gabi4538g00002 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Gabi4538g00002 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 18 198 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gabi4538g00002 263 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Gabi4538g00002 263 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Gabi4538g00002 263 CDD SANT 80 121 IPR001005 -
Gabi4538g00002 263 Gene3D - 80 124 - -
Gabi4538g00002 263 Gene3D - 23 75 - -
Gabi4538g00002 263 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Gabi4538g00002 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Gabi4538g00002 263 FunFam Myb transcription factor 23 75 - -
Gabi4538g00002 263 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Gabi4538g00002 263 CDD SANT 25 70 IPR001005 -
Gabi4538g00002 263 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4538g00002 Gabi-Chr4538 14995 16148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4538g00002 16 263 MYB Transcription Factor Family AT4G13480 56.410 3.76e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4538g00002 Myb_DNA-binding 5.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4538g00002 K09422 - gmx:100795981 432.18