Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4537g00006 ATGAGTGCTCCTATGGAGATGGAGACAACAGAGCAGAATCCCCCAACCGATCAAAACGGCGACGCTTCCCAACACTCTTCTTTGCTTCCCGAGGACAAAGTTCTCGTCCCTGTTGAGGTATGCTTAAAACTTTCGAGCACAGTTAGGGTCGACGATGTTCGTTCAGCCGTTGAGAGGATGCTTGAAAAGAGGAGTTTGAGCTATATTGGTGGACCCATTCCCGTGCCTCTTGATGAGACGTTTCTTGCAGATAACGTGCAAAGAATTTGTGTCTGTGATGCAGATGAAGGGATGCACAATGATAACATTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTACATGTCTTTAAGCTTAGCGAGGAAGGACCATGTGAGGATATAAGCTCTGATGGTCAGTCTTCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGTTGTTACGTTATGCAGCAAGTGCTTTGCTCTTTACTGAAAAGGGTGTTGATCCATTCCTTGTTTCATGGAACCGAATAATTCTTTTGCATGGACCCCCTGGAACTGGAAAGACGTCTTTATGTAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTCAAGGTACCCTCAGTGCCAACTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAGAAGATTCAAGAAATGGTCGAAGAAGAAAGCAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGATTCTATTAGGGTTGTCAATGCGTTACTAACTCAGATGGACAAGTTGAAATCATCTCCAAATGTGATAGTTCTGACTACATCCAACATAACTACTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAGGCATATGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCTTGCTTGCAGGAGCTGATGCGTACAGGGATCTTAACTAGTTTACAGGATTGTAAGAATGTCATGCTTCCAAATTATGCTAGCGCAAAAGAGGGGTTGAACCCACCAGATTTTCATGAGGCTGCTGCATCCATGCAACTGTGCAAGCTACTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCTTTGAGAAAGCTTCCATTTTTGGCACATGCTGCCCTTGCCAATCCTTTTGATTGCAACCCTATTAAGTTCCTATGTACAATGATAGAAACAGCGAAGAGGGAACGTTCTGAGCTTCCTGACTAA 1356 0.4277 MSAPMEMETTEQNPPTDQNGDASQHSSLLPEDKVLVPVEVCLKLSSTVRVDDVRSAVERMLEKRSLSYIGGPIPVPLDETFLADNVQRICVCDADEGMHNDNILLFWQVKPVVHVFKLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIVLTTSNITTAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRTGILTSLQDCKNVMLPNYASAKEGLNPPDFHEAAASMQLCKLLLETAEACEGMSGRSLRKLPFLAHAALANPFDCNPIKFLCTMIETAKRERSELPD 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4537g00006 451 ProSitePatterns AAA-protein family signature. 307 326 IPR003960 GO:0005524|GO:0016887
Gabi4537g00006 451 SMART AAA_5 185 337 IPR003593 GO:0016887
Gabi4537g00006 451 MobiDBLite consensus disorder prediction 1 26 - -
Gabi4537g00006 451 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 19 448 IPR044539 -
Gabi4537g00006 451 Pfam ATPase family associated with various cellular activities (AAA) 189 334 IPR003959 GO:0005524|GO:0016887
Gabi4537g00006 451 Gene3D - 128 352 IPR027417 -
Gabi4537g00006 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 419 IPR027417 -
Gabi4537g00006 451 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 189 207 IPR001270 GO:0005524
Gabi4537g00006 451 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 303 317 IPR001270 GO:0005524
Gabi4537g00006 451 CDD RecA-like_Pch2-like 135 333 - -
Gabi4537g00006 451 FunFam pachytene checkpoint protein 2 homolog 129 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4537g00006 Gabi-Chr4537 64596 70503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4537g00006 189 384 Calmodulin-binding Proteins AT3G56690 29.798 1.30e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4537g00006 K22399 - gmx:100812167 801.586