Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4537g00002 ATGCCGCCGGATTCCCCCGAGCAAGACCTCGACAATTCTGATACCGAGTTCGTCGAGATTGATCCTACCGGTCGATATGGTCGGTACAAGGAAGTTTTAGGAAAGGGGGCTTTCAAGAAAGTATATCGAGCGTTTGATGAGTTGGAAGGTATTGAAGTGGCTTGGAATCAGGTTAAGGTGGCTGATCTATTGCGCAATTCTGAAGATTTGGAGCGGCTTTATTCGGAAGTTCATTTGCTCAAGACTTTGAAACATAAGAATATAATTAAATTTTACAATTCATGGGTTGACACCAAGAATGAGAACATCAACTTCATTACTGAGATTTTCACCTCGGGAACATTACGCCAATACCGGAAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAGGGCCTTTTGTATCTTCACAGTCATAATCCACCAGTTATTCATCGAGACCTTAAGTGTGACAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCAGCCATCCTTCAACAGGCCAATTCAGCACACAGTGTCATTGGTACCCCAGAGTTCATGGCCCCAGAACTTTATGAAGAGGAATACAATGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTAGAGTTGGTAACTGTTGAGTACCCATATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTGGCAGATCTTGAAGTCAGAGCATTTATAGAAAAGTGTATTGCTAATGTGTCTGAACGGTTGCCTGCAAAGGATCTCTTGATGGATCCCTTCCTTCAGTCAGACTATGATAGTGAAAGCGTAGGTCGATCTTCCAGGTCTGAAATCCATCATTCAGGAAATAGTTGTGATAATAAAGCCGTTGGAAAAAGAGCTGAGGATAATATTGTTGAGACAAGTAGGGAATTCACAGTGGAAGGTCAAAGGAGAGATATTAATACAATATTTTTAAAATTGCGAATTGCAGACTCCTCAGGTCAAATTCGCAATATCCACTTTCCTTTTGATGTTGGAGCAGACACTTCAATCTCTGTTGCTAGTGAAATGGTTGAGGAGTTGGAACTTACTGATCAAGATGTTACGACTATTGCTGAGATGATTGATTCAGAAATTCGATATCACATTCCTGACTGGAATCCCGGTGAAACTCCTGTAGATAGTGTTTGTCGAGATTCAGCAGTTACAGGTGGCTGTACCCCTGAAACTAGGCTTGAGGCTTCTCCTGTGGGACATGATTCTACCACTTCTGCTGGCAATCTTGCATTAGAAATATTACCTTCAGGTCGTAAGTACTGGTCAGACTCACCGAAGGCAGTTGGTGGAAACTCTCCATCTCGGCTTGGTCCTTCAGACTTGTCTTATGAAGCGGATGTGAATGCTAAGGAAGGAAGCTTGGCTGCAAATGGTATTATTTCAGTTGAGCTGGTGCCTGATGACCGGATCTGTGTTGGTGATTGTAGTGCAGAGAAGGAATTTGATGGGACTGCTAATTCCCCTTACAGTCACAGAAGTATCACATCTGGGTATTTAGAAGCAACCAGTGAAAAATCTTCTGTGGAAGAAATATCTGGAAGTTTGAAAGAGTCTGAAACAGAATACGTCAATAACATGGTAATAAAACTGAAGGATTTGTTTGTTAAGCAAAGACAGGAATTAGACGAACTAAAGAGGAAGCACAAATTAGCTGTCTCAGATCTTCTCAAGGAACTTTCTCCAGAAATGTGCCAGAAGGTCGTAAATATATGCAACCTGCAGATGCCTGAGTATGAAATGTAG 1854 0.4164 MPPDSPEQDLDNSDTEFVEIDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVADLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVADLEVRAFIEKCIANVSERLPAKDLLMDPFLQSDYDSESVGRSSRSEIHHSGNSCDNKAVGKRAEDNIVETSREFTVEGQRRDINTIFLKLRIADSSGQIRNIHFPFDVGADTSISVASEMVEELELTDQDVTTIAEMIDSEIRYHIPDWNPGETPVDSVCRDSAVTGGCTPETRLEASPVGHDSTTSAGNLALEILPSGRKYWSDSPKAVGGNSPSRLGPSDLSYEADVNAKEGSLAANGIISVELVPDDRICVGDCSAEKEFDGTANSPYSHRSITSGYLEATSEKSSVEEISGSLKESETEYVNNMVIKLKDLFVKQRQELDELKRKHKLAVSDLLKELSPEMCQKVVNICNLQMPEYEM 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4537g00002 617 Coils Coil 564 584 - -
Gabi4537g00002 617 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4537g00002 617 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Gabi4537g00002 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Gabi4537g00002 617 FunFam Probable serine/threonine-protein kinase WNK3 339 430 - -
Gabi4537g00002 617 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4537g00002 617 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4537g00002 617 CDD STKc_WNK 25 285 - -
Gabi4537g00002 617 SUPERFAMILY Protein kinase-like (PK-like) 29 296 IPR011009 -
Gabi4537g00002 617 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Gabi4537g00002 617 Gene3D - 339 415 - -
Gabi4537g00002 617 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Gabi4537g00002 617 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 343 397 IPR024678 GO:0004674|GO:0005524
Gabi4537g00002 617 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 458 - -
Gabi4537g00002 617 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4537g00002 Gabi-Chr4537 33704 37691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4537g00002 17 404 MAP Kinase Kinase Kinase AT3G22420 54.875 4.71e-166 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi4537g00002 Pkinase 2.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4537g00002 K08867 - gmx:100301899 885.174